SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36820

Length: 2600 nt

UniGene Fasta

>sp_v3.0_unigene36820
GTCGTGACCTTGGCTGTCACTCAAGGGTCGGTAGGTGAGAGCATCCTGGTAGTTTCCTTTTTACCCAAGTGAATGAGGCTGGAAGAAACCAGTGTTTACATTTCTCCTTGTTGATATTTATGTTATAAAGCAAGGAATCGTTGAGAAATAGCCACAGATATCGGGGAACACTGGGCTTCTGCAAATGTACTGATATTGATATTCCCCCAGCTCTGTGTGGACTGACTCAGGTTACTTCTCAATCAAAAAATGAAGGATAAAGATTTCAAACCAGCAATGTACGTGGACAAGTCCCTGAGACTGGTTCCTATCGCTATGATGCTCCTCTCCTTATGTGCCCTTTCATTTTACCTTGGTGGTATCTTTTGCTCTGAGAAGAGCAGACTTGTTCTAGAAGATAAAACGTCACTTGCCCCTCTACAAGTGGGCTGCAATGTCGCCGAAGTGAAGTCCATGAAGTTTGGAGAGTGCAGCAGTGACTATCAAGATTACACTCCATGCACAGATCCAAAGAGATGGAGAAAGTATGATGCTCACAGGCTTGCATTTAGGGAGCGACACTGCCCCCCACTTTCTGAAAGAGTCGAATGCTTAATCCCTCCACCAGAAGGCTACAAGATACCTATTAGATGGCCAAAGAGCAAGGATGAGTGTTGGTACAGGAATGTCCCCTATGAATGGATCAATAATGAAAAATCAAATCAGCATTGGTTGAGGAAAGAAGGGGAGAAATTCCTCTTCCCAGGTGGAGGTACAATGTTTCCCAATGGAGTTGGTGAATATGTGGATCATATGGAAGAGTTGATCCCAGGAATGAAAGATGGCACAGTCCGAACTGCACTTGATACTGGATGTGGGGTTGCAAGTTGGGGTGGTGATTTGCTGGATCGTGGAATAATTACAGTGTCACTGGCGCCCAGAGATAATCATGAAGCGCAAGTGCAGTTTGCACTTGAACGGGGTATTCCTGCAATGCTGGGTATCATCTCTACACAGCGGCTTCCTTATCCATCCAATGCATTTGACATGGCTCACTGCTCTCGATGTCTCATTCCATGGACAGAATTTGGTGGAGCCTACCTTATGGAAATAGATCGAGTACTGCGACCAGGAGGCTTCTGGGTCCTATCTGGACCACCAGTAAACTATGAAAATAGATGGCATGGATGGAACACAACTATAGAGGAGCAGAAGGCTAACTATGATGCCCTTCAAGGTCTTTTGAACAAGATGTGCTATAAACTATACAATAAAAAGGATGACATTGCTGTATGGCAGAAATCTTTGGATAGTGGTTGCTACGCTACCCGTGAAAAAACAGTTTACCCCCCTGAATGTGATGACAGCATTGAACCAGATGCTGCCTGGTATGTTCCCATGCGGTCTTGTATAGTAAAACCAAATCCCAACTTCAAGAAGTTAGGAGTAGGACAGACTCCAAAGTGGCCACAACGTTTGAAGATAGCCCCAGAACGGGTCCGTACATTTTCTGGGGGCAGTGATGGTGCTTTCAGAAAGGATACAACTCAATGGATGGCGCGCGTTAACCATTACAAGACATTGGTACCTGATCTTGGAACAGATAAAATAAGAAATGTTATGGATATGAACACTCTTTATGGTGGTTTTGCTGCAGCACTGATAAATGATCCTCTGTGGGTCATGAATGTGGTTTCCTCTTATGGTCTAAATTCCTTGAATGTTGTTTATGACCGAGGACTAATTGGTACATATAATGACTGGTGTGAGGCATTTTCAACCTATCCAAGAACATATGATCTCCTACATGTTGATGGTCTTTTCAGTGCAGAAAGTCACAGATGTGAGATGAAATATGTGTTGTTGGAAATGGACCGTATATTAAGACCTGCTGGCTATGTCATAATGCGTGAATCACCCCATTTTGTGAATAGTGTCAAGAATCTAGCCACAGGCATGAGATGGAATTGCCACCAGAGGGACACTGAGGATGCTAATAATGGGGATGAAAAACTTCTCATTTGTCAGAAAAAGGATTGGAGGTCTTCAAAAGCTGCTTCTGAATGATAAATAAAACCTTAAAATTTCAAGGCCCCTATTCCTATTCTATGCCAATCAATCTGGCATCAGAGTGAGTGCCTGGCTGTGAAGGTATCTGTTGATAGGTGCATTTGCCAGCCGGTATATATCATGTCAGTGAAATTCAGTGATCCGTTTCATTTTCCCAGGATGCCAAAGTTATTTATTCCCCTGGCATTTGGGAGGCCTAATACTGAATATTAGAACTACTATATTGAATCAAATCCATTCATTTTATCTTGAAGTAAGGTGGGTAGTTAGGTGTTATTTATATTTGCAGTTTTCACGAGGGAGGGATTTTGTAATGCCAAAACCCTTCGCGCTGCGATGTTTTAGAACACTTTTATTACTTCCATTGCTTATGTCTTATCGGAAGGTGGCCTCAAATGATGTCCGCTATCAGTACTTCTGTATTACTTTATCATTTATTATTTTAAAGTTTGAATGCATGCCATCAACTCGTGGTATGCTGCTAAATTTCTTGAAGTAACAACAGTTTGTTTTGATCTGTTGTAATGAGATTATTTTATTGGTTCCAAAAA

Ace file of the UniGene sp_v3.0_unigene36820

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative methyltransferase PMT21 [Arabidopsis thaliana] ref\|NP_849408.1\| putative methyltransferase PMT21 [Arabidopsis thaliana] sp\|Q94II3.1\|PMTL_ARATH RecName: Full=Probable methyltransferase PMT21; AltName: Full=Protein EARLY-RESPONSIVE TO DEHYDRATION 3	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	ATP binding protein, putative	-	-	3.952e-22	-

Source	Gene names
Sma3	AT1G26850; AT1G31850; AT4G18030; AT4G19120; AT4g00750; AT4g10440; AT4g14360; AT4g18030; AT4g19120; At1g04430; At1g04430/F19P19.11; At1g26850; At1g29470; At1g31850; At1g33170; At1g77260; At2g34300; At2g39750; At2g40280; At2g43143; At2g43200; At2g45750; At3

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G19120.1	ERD3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr4:10460665-10463034 REVERSE LENGTH=600	67%
RefSeq	Arabidopsis thaliana	NP_849408.1	putative methyltransferase PMT21 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002326766.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMQ4

Fln msg: your sequence is shorter than subject: 599 - 626

Fln protein: MKDKDFKPAMYVDKSLRLVPIAMMLLSLCALSFYLGGIFCSEKSRLVLEDKTSLAPLQVGCNVAEVKSMKFGECSSDYQDYTPCTDPKRWRKYDAHRLAFRERHCPPLSERVECLIPPPEGYKIPIRWPKSKDECWYRNVPYEWINNEKSNQHWLRKEGEKFLFPGGGTMFPNGVGEYVDHMEELIPGMKDGTVRTALDTGCGVASWGGDLLDRGIITVSLAPRDNHEAQVQFALERGIPAMLGIISTQRLPYPSNAFDMAHCSRCLIPWTEFGGAYLMEIDRVLRPGGFWVLSGPPVNYENRWHGWNTTIEEQKANYDALQGLLNKMCYKLYNKKDDIAVWQKSLDSGCYATREKTVYPPECDDSIEPDAAWYVPMRSCIVKPNPNFKKLGVGQTPKWPQRLKIAPERVRTFSGGSDGAFRKDTTQWMARVNHYKTLVPDLGTDKIRNVMDMNTLYGGFAAALINDPLWVMNVVSSYGLNSLNVVYDRGLIGTYNDWCEAFSTYPRTYDLLHVDGLFSAESHRCEMKYVLLEMDRILRPAGYVIMRESPHFVNSVKNLATGMRWNCHQRDTEDANNGDEKLLICQKKDWRSSKAASE*

Protein Length: 600

Fln nts: GTCGTGACCTTGGCTGTCACTCAAGGGTCGGTAGGTGAGAGCATCCTGGTAGTTTCCTTTTTACCCAAGTGAATGAGGCTGGAAGAAACCAGTGTTTACATTTCTCCTTGTTGATATTTATGTTATAAAGCAAGGAATCGTTGAGAAATAGCCACAGATATCGGGGAACACTGGGCTTCTGCAAATGTACTGATATTGATATTCCCCCAGCTCTGTGTGGACTGACTCAGGTTACTTCTCAATCAAAAA_-_ATGAAGGATAAAGATTTCAAACCAGCAATGTACGTGGACAAGTCCCTGAGACTGGTTCCTATCGCTATGATGCTCCTCTCCTTATGTGCCCTTTCATTTTACCTTGGTGGTATCTTTTGCTCTGAGAAGAGCAGACTTGTTCTAGAAGATAAAACGTCACTTGCCCCTCTACAAGTGGGCTGCAATGTCGCCGAAGTGAAGTCCATGAAGTTTGGAGAGTGCAGCAGTGACTATCAAGATTACACTCCATGCACAGATCCAAAGAGATGGAGAAAGTATGATGCTCACAGGCTTGCATTTAGGGAGCGACACTGCCCCCCACTTTCTGAAAGAGTCGAATGCTTAATCCCTCCACCAGAAGGCTACAAGATACCTATTAGATGGCCAAAGAGCAAGGATGAGTGTTGGTACAGGAATGTCCCCTATGAATGGATCAATAATGAAAAATCAAATCAGCATTGGTTGAGGAAAGAAGGGGAGAAATTCCTCTTCCCAGGTGGAGGTACAATGTTTCCCAATGGAGTTGGTGAATATGTGGATCATATGGAAGAGTTGATCCCAGGAATGAAAGATGGCACAGTCCGAACTGCACTTGATACTGGATGTGGGGTTGCAAGTTGGGGTGGTGATTTGCTGGATCGTGGAATAATTACAGTGTCACTGGCGCCCAGAGATAATCATGAAGCGCAAGTGCAGTTTGCACTTGAACGGGGTATTCCTGCAATGCTGGGTATCATCTCTACACAGCGGCTTCCTTATCCATCCAATGCATTTGACATGGCTCACTGCTCTCGATGTCTCATTCCATGGACAGAATTTGGTGGAGCCTACCTTATGGAAATAGATCGAGTACTGCGACCAGGAGGCTTCTGGGTCCTATCTGGACCACCAGTAAACTATGAAAATAGATGGCATGGATGGAACACAACTATAGAGGAGCAGAAGGCTAACTATGATGCCCTTCAAGGTCTTTTGAACAAGATGTGCTATAAACTATACAATAAAAAGGATGACATTGCTGTATGGCAGAAATCTTTGGATAGTGGTTGCTACGCTACCCGTGAAAAAACAGTTTACCCCCCTGAATGTGATGACAGCATTGAACCAGATGCTGCCTGGTATGTTCCCATGCGGTCTTGTATAGTAAAACCAAATCCCAACTTCAAGAAGTTAGGAGTAGGACAGACTCCAAAGTGGCCACAACGTTTGAAGATAGCCCCAGAACGGGTCCGTACATTTTCTGGGGGCAGTGATGGTGCTTTCAGAAAGGATACAACTCAATGGATGGCGCGCGTTAACCATTACAAGACATTGGTACCTGATCTTGGAACAGATAAAATAAGAAATGTTATGGATATGAACACTCTTTATGGTGGTTTTGCTGCAGCACTGATAAATGATCCTCTGTGGGTCATGAATGTGGTTTCCTCTTATGGTCTAAATTCCTTGAATGTTGTTTATGACCGAGGACTAATTGGTACATATAATGACTGGTGTGAGGCATTTTCAACCTATCCAAGAACATATGATCTCCTACATGTTGATGGTCTTTTCAGTGCAGAAAGTCACAGATGTGAGATGAAATATGTGTTGTTGGAAATGGACCGTATATTAAGACCTGCTGGCTATGTCATAATGCGTGAATCACCCCATTTTGTGAATAGTGTCAAGAATCTAGCCACAGGCATGAGATGGAATTGCCACCAGAGGGACACTGAGGATGCTAATAATGGGGATGAAAAACTTCTCATTTGTCAGAAAAAGGATTGGAGGTCTTCAAAAGCTGCTTCTGAATGA___TAAATAAAACCTTAAAATTTCAAGGCCCCTATTCCTATTCTATGCCAATCAATCTGGCATCAGAGTGAGTGCCTGGCTGTGAAGGTATCTGTTGATAGGTGCATTTGCCAGCCGGTATATATCATGTCAGTGAAATTCAGTGATCCGTTTCATTTTCCCAGGATGCCAAAGTTATTTATTCCCCTGGCATTTGGGAGGCCTAATACTGAATATTAGAACTACTATATTGAATCAAATCCATTCATTTTATCTTGAAGTAAGGTGGGTAGTTAGGTGTTATTTATATTTGCAGTTTTCACGAGGGAGGGATTTTGTAATGCCAAAACCCTTCGCGCTGCGATGTTTTAGAACACTTTTATTACTTCCATTGCTTATGTCTTATCGGAAGGTGGCCTCAAATGATGTCCGCTATCAGTACTTCTGTATTACTTTATCATTTATTATTTTAAAGTTTGAATGCATGCCATCAACTCGTGGTATGCTGCTAAATTTCTTGAAGTAACAACAGTTTGTTTTGATCTGTTGTAATGAGATTATTTTATTGGTTCCAAAAA

Fln Alignment:

Contig36820___LCALSFYLGG------------------IFCSEKSRLVLEDKTSL---APLQVGCNVAEVKSMKFGECSSDYQDYTPCTDPKRWRKYDAHRLAFRERHCPPLSERVECLIPPPEGYKIPIRWPKSKDECWYRNVPYEWINNEKSNQHWLRKEGEKFLFPGGGTMFPNGVGEYVDHMEELIPGMKDGTVRTALDTGCGVASWGGDLLDRGIITVSLAPRDNHEAQVQFALERGIPAMLGIISTQRLPYPSNAFDMAHCSRCLIPWTEFGGAYLMEIDRVLRPGGFWVLSGPPVNYENRWHGWNTTIEEQKANYDALQGLLNKMCYKLYNKKDDIAVWQKSLDS-GCYATREKTVYPPECDDSIEPDAAWYVPMRSCIVKPNPNFKKLGV---GQTPKWPQRLKIAPERVRTFS--GGSDGAFRKDTTQWMARVNHYKTLVPDLGTDKIRNVMDMNTLYGGFAAALINDPLWVMNVVSSYGL-NSLNVVYDRGLIGTYNDWCEAFSTYPRTYDLLHVDGLFSAESHRCEMKYVLLEMDRILRPAGYVIMRESPHFVNSVKNLATGMRWNCHQRDTEDANNGDEKLLICQKKDWRSSKA
B8LMQ4_______________LCTLFYFLGAWQNTLPPPSEASRLRKANVSCSSLSPIVSSSSVSLDFEAHHAVGGNETSKDSINFESCDIKYSEYTPCQDPDRARKFDRTKLIYRERHCPDKKEALKCLIPAPPGYKNPFRWPKSRDYAWFANVPHRELTIEKAVQNWIQVEDDKFRFPGGGTMFTRGADAYIDDIDKLIP-LTDGSIRTAIDTGCGVASWGAYLLKRNILTMSFAPRDTHEAQVQFALERGVPAMIGIMASQRIPYPARAFDMAHCSRCLIPWKDYDGVYLIEVDRVLRPGGYWILSGPPVNWKKYHRGWERTPEDLKQEQDAIEDVAKRLCWKKVVEKGDLAIWQKPMNHIDCVKSRNIYKVPHICKND-NPDAAWYRKMETCIT-PLPEVNDINAVAGGALEKWPKRVTAVPPRIRSGSIPGITAENFNEDSKLWTDRVANYKRLIGQLGQGRYRNIMDMNAGLGGFAAALANDPVWVMNVVPSDAKHNTLGVIYERGFIGTYQDWCEAFSTYPRTYDLIHASGLLSMYQDRCEISDILLEMDRILRPEGTVIFRDTVDVLVKVENLIGGMRWQSQMMDHESGPFNQEKILIAVKQYWTGKAA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
150	42		14		1.0
152		42	57		1.0
153		42	57		1.0
155		57	42		1.0
446		25		75	1.0
504	87		12		0.992554
2007	25		75		0.996473
2160	5		94		0.985476
2326		7		92	1.0
2532		5		94	0.998578

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain