SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36762

Length: 668 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene36762 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=3 Tax=Piroplasmida RepID=A7AUI5_BABBO	-	-	2.0e-14	61%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Histone H2A	-	-	9.82001e-40	-

Source	Gene names
Sma3	At1g52740; At2g38810; At3g54560; F13I13.4; F14G24.1; GSVIVT00023817001; GSVIVT00032564001; GSVIVT00034539001; H2A; H2AV; H2a; HTA1501; HTA1502; HTA1506; HTA904; HTA905; HTA906; HTA907; HTA916; LOC_Os03g06670; LOC_Os03g53190; LOC_Os10g28230; MICPUCDRAFT_27

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2A	IPR002119	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54560.1	HTA11 histone H2A 11 chr3:20196532-20197466 FORWARD LENGTH=136	3.0e-16	74%
RefSeq	Arabidopsis thaliana	NP_191019.1	histone H2A [Arabidopsis thaliana]	4.0e-16	74%
RefSeq	Populus trichocarpa	XP_002307619.1	histone 2 [Populus trichocarpa]	4.0e-16	74%

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
142	163	AT AT AT AT AT AT AT AT AT AT AT	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain