SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36506

Length: 617 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene36506 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cinnamyl alcohol dehydrogenase (Fragment) n=23 Tax=Coniferales RepID=D3XFG5_CUNLA	-	-	9.99967e-42	70%
FL-Next	sp=Probable cinnamyl alcohol dehydrogenase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	60%
Sma3	Cinnamyl alcohol dehydrogenase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940		0.0	%
Sma3	Biosynthesis of phenylpropanoids	01061		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	Mannitol dehydrogenase.	EC:1.1.1.255	-	3.306e-26	-

Source	Gene names
Sma3	AT4G37970; AT4G37980; AT4g37970; At3g19450; At4g34230; At4g37970; At4g37980; At4g37990; BM1; CAD; CAD1; CAD14; CAD19; CAD2; CAD3; CAD4; CAD5; CAD6; CAD7; CAD8; CADL1; CADL10; CADL4; CADL6; CADL7; CADL8; CADL9; ELI3; ELI3-1; ELI3-2; F20D10.100; F20D10.110;

Source	GOs	Term	Type	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	-
Sma3	mannitol dehydrogenase activity	GO:0046029	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19450.1	CAD4, ATCAD4, CAD, CAD-C GroES-like zinc-binding alcohol dehydrogenase family protein chr3:6744859-6747005 FORWARD LENGTH=365	1.0e-38	50%
RefSeq	Arabidopsis thaliana	NP_188576.1	cinnamyl alcohol dehydrogenase 4 [Arabidopsis thaliana]	2.0e-38	50%
RefSeq	Populus trichocarpa	XP_002313875.1	cinnamyl alcohol dehydrogenase [Populus trichocarpa]	4.00001e-41	58%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
408	14	85			0.993533
520		20		80	0.995493
575		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain