SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36227

Length: 1141 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene36227

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 1-gamma 1 n=9 Tax=Oryza sativa RepID=EF1G1_ORYSJ	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Elongation factor 1-gamma	-	-	3.032e-12	-

Source	Gene names
Sma3	AT1G09640; AT1G57720; At1g09640; At1g57720; B1131G07.12; GSVIVT00021932001; GSVIVT00035293001; LOC_Os02g12800; LOC_Os06g37440; MtrDRAFT_AC140549g9v2; OSJNBa0006A22.2; Os02g0220500; Os02g0220600; Os06g0571400; OsI_06401; OsI_06402; OsI_23436; OsJ_05923; Os

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	eukaryotic translation elongation factor 1 complex	GO:0005853	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EF1B, gamma chain, conserved	IPR001662	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G09640.1	Translation elongation factor EF1B, gamma chain chr1:3120162-3122152 FORWARD LENGTH=414	75%
RefSeq	Arabidopsis thaliana	NP_563848.1	elongation factor EF-1 gamma subunit [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002331090.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWP6

Fln msg: your sequence is shorter than subject: 275 - 424

Fln protein: NTYLVGHSITLADIIMTCNLYLGFTSCMTKDFTKEFPHVERYFWTMVNQPKFKKIMGEVKQTDAVPPVVQTRKAAATKEQKQKPKQEAPKKEPANPKVEDTPAYDEEEAPKPKPKNSLDLLPPSKMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSYVTLNKVTGFLQRMDLARKYAFGKMLIIGEKGPFKVKGLWLFRGPEIPKFVMDECYDMELYEWTKVDINDEAQKERVNAMIEDQEPFEGEPLLDAKCFK*

Protein Length: 276

Fln nts: AATACCTATCTGGTTGGGCATTCCATAACATTGGCAGACATTATTATGACATGCAACTTGTATTTGGGTTTTACGTCTTGCATGACAAAAGACTTCACTAAAGAGTTTCCTCATGTTGAGCGGTACTTTTGGACTATGGTTAATCAACCTAAATTCAAGAAGATTATGGGTGAAGTTAAACAAACAGATGCTGTTCCTCCAGTTGTGCAGACTAGGAAGGCTGCTGCAACCAAGGAACAAAAGCAAAAGCCTAAACAGGAGGCCCCAAAAAAAGAACCCGCAAACCCCAAGGTTGAAGATACTCCAGCATACGATGAGGAAGAGGCCCCCAAGCCAAAGCCAAAAAATTCTCTTGATCTCCTACCACCAAGTAAAATGATTCTTGATGACTGGAAGAGGCTTTATTCGAACACGAAGACTAATTTTCGAGAGGTTGCTATTAAAGGGTTCTGGGATATGTATGATCCAGAGGGTTATTCCTTGTGGTTCTGTGAGTACAAATACAATGATGAGAACACAGTTTCATATGTCACATTGAACAAAGTCACGGGATTCTTGCAGCGCATGGATCTTGCACGCAAGTATGCTTTTGGAAAGATGCTTATCATTGGAGAAAAGGGTCCTTTTAAAGTCAAGGGATTATGGCTCTTCCGTGGCCCAGAAATTCCGAAGTTCGTTATGGATGAATGCTACGATATGGAGTTGTATGAATGGACTAAGGTGGACATCAATGATGAGGCTCAGAAAGAGCGTGTGAATGCCATGATTGAAGATCAAGAGCCCTTTGAGGGTGAGCCTTTGTTGGATGCCAAATGTTTCAAGTGA___TATATTCCCTTGCATGTCAGTTTTGAAGATTTGGTCTTGTTTAGAACTATATTGTTTTGTCTTCATGTTTCATCCACAATTTATGCGGAGAAGCTTTTTATGCAACTGCTTGAGTTCAAGCTACCTTTCAGAGATTGAGTCATTGTATGAGGAATTTTCTGGAATAATTGGGTTCATTTAAAAAAATCGATGTTTTGGACTAAACTATTGTGGTTATTTCAGGATTAAATTTGTGTCATATTTCTTCTTGGCGAGAAACACCATATCTTGCTACAGTTGGCATCTTTGCCTTGATTAATTTTGCTGTAAATTGAAC

Fln Alignment:

Contig36227___NTYLVGHSITLADIIMTCNLYLGFTSCMTKDFTKEFPHVERYFWTMVNQPKFKKIMGEVKQTDAVPPVVQT--RXXXXXXXXXXXXXXXXXXXXXXNPKVEDTPAYDEEE-APKPKPKNSLDLLPPSKMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSYVTLNKVTGFLQRMDLARKYAFGKMLIIGEKGPFKVKGLWLFRGPEIPKFVMDECYDMELYEWTKVDINDEAQKERVNAMIEDQEPFEGEPLLDAKCFK
A9NWP6_______________NTYLVGHSITLADIIMTCNLYLGFSRCMTKDFTKEFPHVERYFWTMVNQPKVKKILGEVKQADAVPAVVHPNKKAAAPAKEQKQKPKQEVKIKEAAKPKVEDPPAADEEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVTGFLQRMDLARKYAFGKMLIIGKEGPFKVKGLWLFRGPEIPKFFVDECYDMELYEWTKVDLNDEAQKELVNAMIEDQEPFEGEPLLDAKCFK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
285		25		75	0.996473
639	58		41		1.0
711	50		50		1.0
808			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain