SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene36023

Length: 925 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene36023 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0513700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0E0X9_ORYSJ	-	-	0.0	38%
FL-Next	tr=Os02g0513700 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	38%
Sma3	cDNA clone:J033090I04, full insert sequence	-	-	8.772e-06	-

Source	Gene names
Sma3	OJ1123_C08.3; Os02g0513700; Os05g0414400; OsI_28770; P0017D10.17;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	HAT dimerisation	IPR008906	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q0E0X9

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 308 - 675

Fln protein: ELVEDILSPIHSS*SSFGVTIVSGGWTDTRRRPLINIIATSPKGAIFIKAEDCSGEVKDAQFIVDVIIKAIEQIGPNRVVQVITDNAPVCKATGLIIEGRYDHIFWTPCIVHNLNLILEEIDNKVPWIKEITGEAREIVKFITNHHQSQAIFREYSKLELFLWW*VNFRLSGDKQIQSGDIWCVRLCLDEDWWSKIDFLLKFTTPAFELLRNADNDQPFLGEVYDGIDSMVEKTMEIISQESP*FLFVDDHFVDLVKKITVDRWNNFNTPLHTLAHALNPKFYDEGLVVQSNGKRKAPHKDREVANGV

Protein Length: 309

Fln nts: GGAGCTTGTGGAGGATATCTTATCACCAATTCATTCTTCCTAGAGTAGCTTTGGGGTTACCATAGTCTCAGGTGGATGGACAGATACAAGGCGCAGACCATTGATAAATATCATTGCCACTTCCCCCAAAGGAGCAATATTTATAAAGGCAGAAGACTGCTCAGGAGAGGTAAAAGATGCACAGTTCATTGTTGATGTTATTATAAAAGCTATTGAACAAATAGGGCCTAACAGGGTGGTGCAAGTTATCACAGATAATGCACCAGTTTGCAAAGCTACAGGTTTAATTATTGAGGGGAGGTATGACCACATCTTTTGGACACCCTGCATTGTCCATAATCTGAATCTGATCTTAGAGGAGATAGACAACAAAGTTCCATGGATAAAGGAAATCACAGGGGAAGCAAGGGAGATTGTTAAATTCATCACCAACCACCACCAATCTCAAGCAATATTTCGAGAGTACTCCAAATTGGAGTTGTTTCTATGGTGGTGAGTCAACTTTAGGTTGAGTGGAGACAAGCAGATTCAAAGTGGGGATATATGGTGTGTACGATTGTGCCTTGATGAGGATTGGTGGAGCAAGATAGATTTCTTGCTAAAGTTCACAACCCCTGCATTTGAGCTTCTACGGAACGCTGACAATGACCAACCTTTCTTAGGAGAGGTGTATGATGGCATAGATTCCATGGTTGAGAAAACTATGGAAATCATTTCACAAGAGTCTCCATAGTTTTTGTTTGTTGATGATCATTTTGTTGATTTAGTCAAGAAAATCACTGTTGATAGGTGGAACAATTTCAACACTCCATTACACACTTTAGCACATGCCTTGAACCCCAAATTTTATGATGAGGGGCTTGTTGTTCAAAGCAATGGGAAGAGGAAGGCGCCCCATAAGGATAGAGAGGTGGCTAATGGGGTG

Fln Alignment:

Contig36023___VEDILSPIHSS*SSFGVTIVSGGWTDTRRRPLINIIATSPKGAIFIKAEDCSGEVKDAQFIVDVIIKAIEQIGPNRVVQVITDNAPVCKATGLIIEGRYDHIFWTPCIVHNLNLILEEI----------DNKVPWIKEITGEAREIVKFITNHHQSQAIFREYSKLELFLWW*VNFRLSGDKQIQSGDIWCVRLCLDEDWWSKIDFLLKFTTPAFELLRNADNDQPFLGEVYDGIDSMVEKTMEIISQESP*FLFVDDHFVDLVKKITVDRWNNFNTPLHTLAHALNPKFYDEGLVVQSNGKRKAPHKDREVA
Q0E0X9_______________VERLLNPLKSTWPVKGVSIVSDGWSDAQRRPLLNFLAVTEDGPMFLRAINTEGEIKRKEYIAEKMIAVIEDVGPKNVVQVITDNAANCRAAGLIVEQRYSHIFWTPCVVHTLNLALKNICAAKSSSGDAYEEFQWITEVAADSSFIKNFIMNHSMRLSMFNEF-----------------NNQVQAQQV--KEKVLNDVWWDKVQYILDFTDPIYSMIRAADTDKPCLHLVYEMWDSMIDKVKKIVYRHEGKELNEHSSFFFHVQEILYSRWAKSNTPLHCLAHSLNPKYYCESWLAEV-PTREAPHMDAEIS

SNPs (tot: 3)

Position	C %	G %	T %	Probability
556	33	66		0.997452
562		33	66	0.997452
606	33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain