SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35678

Length: 1518 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35678

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	(-)-limonene synthase n=3 Tax=Picea RepID=Q20HU7_PICSI	-	-	0.0	81%
FL-Next	tr=(-)-limonene synthase; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	83%
Sma3	Copalyl diphosphate synthase	-	-	9.798e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Levopimaradiene synthase.	EC:4.2.3.32	-	1.812e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Diterpenoid biosynthesis	00904		1.812e-11	%
Sma3	Biosynthesis of secondary metabolites	01110		1.812e-11	%
Sma3	Copalyl diphosphate synthase.	EC:5.5.1.12	-	1.239e-18	-

Source	KEGGs	Term	e value	Identity
Sma3	Diterpenoid biosynthesis	00904	1.239e-18	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.239e-18	%
Sma3	Metabolic pathways	01100	1.239e-18	%
Sma3	Biosynthesis of secondary metabolites	01110	1.239e-18	%

Source	Gene names
Sma3	ABS; AG2.2; AG3.18; AG6.5; JF67; LPS; TASY; TDC1; TPS-Bis; TPS-Far; TPS-ISO; TPS-LAS; TPS-Lim; TPS-Lin; TPS-Lon; TPS-Myr; TPS-Pin; TPS1; TPS2; TPS3; TPS4; TXS; ac22; ag1; ag10; ag11; ag2; ag22; ag3; ag4; ag5; ag6; ag8; ag9; agc11; agc8; agc9; co1; tasy; t

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	carbon-oxygen lyase activity, acting on phosphates	GO:0016838	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	(E)-beta-ocimene synthase activity	GO:0034768	Molecular Function	-
Sma3	pinene synthase activity	GO:0050550	Molecular Function	-
Sma3	myrcene synthase activity	GO:0050551	Molecular Function	-
Sma3	(4S)-limonene synthase activity	GO:0050552	Molecular Function	-
Sma3	abietadiene synthase activity	GO:0050554	Molecular Function	-
Sma3	copalyl diphosphate synthase activity	GO:0050559	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q675L1

Fln msg: Separated hits, possible frame ERROR between 1262 and 1264, Distance to subject end: 142 aas, your sequence is shorter than subject: 494 - 634

Fln protein: MSPVSVISLPSHLCLPTSFIDRSRRELKPLHITIPNVAMRRQGKLMTRASMSMNLRTAVSDDAVIRRRGDYHSNLWDDDFIQSLSAPYGEPSYLERAERLIGEVKKLFNSMSEENGELITPLNDLIQRLWMVDSVERLGIDRHFENEIESALDYVYSYWSVEKGIGCGRESVVTDLNSTALGLRTLRLHGYLVSSEVLKDFQDQNGQFTCSPSKTEGEIRSALNLYRASLIAFPGEKVMEDAEIFSSKYLKEAMQEISVCSLSQEIEYALEYGWHTNMPRLEARNYMDVFGHPTSPWPKKNKEQYMDDEKLLELAKLEFNMFHSLQLKELQDICRWWKDSGLPKLDFSRHRHVEYYTLGSCIATDPKHRAFRLGFAKTCYLVTVLDDIYDTFGTMDEIELFTEAVRRxxDPSETDRLPDYMKTVYMVLYNALTEMAREAEKTQGRDTLNYARKAWEAYFESYIQEAKWIASGNLPMFEKYYENGKLALLIAQRH

Protein Length: 495

Fln nts: GGTCAAAAGCTCTCATATCATATTATAAGCAAGCAGGG_-_ATGTCTCCTGTTTCTGTGATCTCGTTGCCTTCCCACTTGTGCCTGCCCACATCGTTCATCGACAGGTCTCGTCGTGAGCTTAAACCCCTCCATATAACAATTCCAAATGTCGCAATGCGCAGGCAAGGGAAATTAATGACACGTGCTTCCATGAGCATGAATTTGAGGACCGCCGTATCTGATGATGCTGTTATAAGACGCAGAGGTGATTACCATTCCAACCTCTGGGACGATGATTTCATACAGTCCCTTTCCGCGCCTTATGGGGAACCTTCTTACCTTGAACGTGCGGAGAGACTAATTGGGGAAGTAAAGAAGCTATTCAATTCAATGTCAGAGGAGAATGGCGAATTAATCACTCCCCTGAATGATCTGATTCAACGCCTTTGGATGGTCGACAGTGTTGAACGTTTGGGGATCGATAGACATTTCGAAAATGAGATAGAATCAGCGCTGGATTATGTTTACAGTTATTGGAGCGTCGAAAAAGGCATTGGATGTGGGAGAGAGAGTGTTGTCACTGATCTCAACTCGACTGCGTTGGGACTTCGAACTCTTCGTCTACACGGATACCTGGTGTCCTCAGAGGTTTTGAAGGATTTCCAAGACCAAAACGGACAGTTTACGTGTTCTCCCAGTAAAACGGAGGGAGAGATTAGAAGTGCTCTTAATTTATATCGGGCTTCCCTCATTGCTTTTCCCGGGGAGAAAGTCATGGAAGATGCGGAAATCTTCTCCTCAAAATATTTGAAGGAAGCCATGCAAGAGATTTCAGTGTGTAGTCTTTCACAAGAGATAGAGTACGCTTTGGAATATGGTTGGCACACAAATATGCCGAGATTGGAAGCTAGGAATTACATGGATGTATTTGGACATCCTACTAGTCCATGGCCCAAGAAGAATAAGGAACAATATATGGATGACGAAAAACTTCTAGAGCTAGCAAAATTGGAGTTCAACATGTTTCACTCCTTACAACTAAAGGAGTTACAGGATATCTGCAGATGGTGGAAAGATTCGGGTTTGCCTAAACTGGACTTCAGCCGGCACCGTCACGTGGAATACTACACTTTGGGGTCCTGCATTGCAACTGACCCCAAACATCGTGCATTCAGACTGGGCTTTGCCAAAACGTGTTATCTGGTCACAGTTCTGGACGATATCTACGACACTTTTGGAACGATGGACGAAATCGAACTCTTCACAGAAGCAGTCAGGAGATGxxxGGATCCCTCGGAGACAGACCGCCTTCCAGATTATATGAAAACAGTGTACATGGTACTCTACAACGCCCTAACTGAAATGGCCAGAGAGGCGGAGAAGACACAAGGCCGAGACACCCTCAACTATGCTCGAAAGGCTTGGGAGGCTTATTTCGAGTCATATATTCAAGAAGCAAAGTGGATCGCCAGTGGTAACCTGCCAATGTTTGAGAAGTACTACGAGAACGGGAAATTAGCTCTGCTTATCGCCCAGCGGCAT

Fln Alignment:

Contig35678___MSPVSVISLPSHLCLPTSFIDRSRRELKPLHITIPNVAMRRQGKLMTRASMSMNLRTAVSDD-AVIRRRGDYHSNLWDDDFIQSLSAPYGEPSYLERAERLIGEVKKLFNSMSEENGELITPLNDLIQRLWMVDSVERLGIDRHFENEIESALDYVYSYWSVEKGIGCGRESVVTDLNSTALGLRTLRLHGYLVSSEVLKDFQDQNGQFTCSPSKTEGEIRSALNLYRASLIAFPGEKVMEDAEIFSSKYLKEAMQEISVCSLSQEIEYALEYGWHTNMPRLEARNYMDVFGHPTSPWPKKNKEQYMDDXXXXXXXXXXFNMFHSLQLKELQDICRWWKDSGLPKLDFSRHRHVEYYTLGSCIATDPKHRAFRLGFAKTCYLVTVLDDIYDTFGTMDEIELFTEAVRRWxDPSETDRLPDYMKTVYMVLYNALTEMAREAEKTQGRDTLNYARKAWEAYFESYIQEAKWIASGNLPMFEKYYENGKLA
Q675L1_______________MSPVSVIPLAYKLCLPRSLMSSSR-EVKPLHITIPNLGMCRRGKSMAPASTSMILTAAVSDDDRVQRRRGNYHSNLWDDDFIQSLSTPYGEPSYRERAERLKGEIKKMFRSMSKDDGELITPLNDLIQRLWMVDSVQRLGIDRHFKNEIKSALDYVYSYWN-EKGIGCGRDSVVADLNSTALGFRTLRLHGYNVSSEVLKVFEDQNGQFACSPSKTEGEIRSALNLYRASLIAFPGEKVMDDAEIFSSRYLKEAVQEIPDCSLSQEIAYALEYGWHTNMPRLEARNYMDVFGHPSSPWLKKNKTQYMDGEKLLELAKLEFNIFHSLQQEELQYISRWWKDSGLPKLAFSRHRHVEYYTLGSCIATDPKHRAFRLGFVKTCHLNTVLDDIYDTFGTMDEIELFTEAVRRWxDPSETESLPDYMKGVYMVLYEALTEMAQEAQKTQGRDTLNYARKAWEIYLDSYIQEAKWIASGYLPTFQEYFENGKIS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1472	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain