SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35436

Length: 578 nt

UniGene Fasta

>sp_v3.0_unigene35436
CGTGTAAGCGGCTCTGTAGATTTTAGGGTTTAGTAGAGGAGCCGAGAGAAGACTCGAAGCGGAGCGGAGCAGGTGGCACGATGGTGGAGAAGGGAAAGAGCCGCAGGGACGAGGTCGTGACCAGGGAGTACACCATCAATCTTCACAAGCGTCTCCATGGCTGCACTTTTAAGAAAATGGCTCCAAAGGCCGTTAAGGAGATCAGGAAATTTTCCCAGAAGGCTATGGGAACCGCCGATGTGAGGCTTGATGTGAAACTTAATAAGGCTGTATGGAGCAGGGGCATTCCAGGAAGCGTGACGAAGAAGATGCCAAGCAGGAGCTCTATTCGATTGTAACGGTGGCAGAGGTGCCTCCTGAAGGGCTCAGTGGAGTAGGTACTAAGATTATTGAGGAGGAAGATTAATGTAATCACATCTTAAGTACATTTTGCTGTGAAGCGGAATGTAGACTATTATTTTCTTTATAGTGTTATGATTCTGAGGGCATTTAATGCTTTGACACTTCAGTTTTGTAGGACGTGAGGTTTCTTTTTCTGGATTTTTATGTTGACGAAGTAGCTTATTTGTTTATTGGTA

Ace file of the UniGene sp_v3.0_unigene35436

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L31 n=5 Tax=Pinaceae RepID=RL31_PICMA	-	-	1.0e-30	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	60S ribosomal protein L31	-	-	2.229e-40	-

Source	Gene names
Sma3	60SRPL31a; At2g19740; At4g26230; At5g56710; CHLREDRAFT_78109; F6F22.23; GSVIVT00008838001; GSVIVT00016611001; MICPUCDRAFT_24390; MICPUN_91199; MIK19.16; OJ1134_H03.20; OJ2056_H01.22-1; OSJNBa0025J22.10; OSTLU_17087; Os02g0717800; Os06g0319700; Os08g050530

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L31e	IPR000054	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G19740.1	Ribosomal protein L31e family protein chr2:8513577-8514346 FORWARD LENGTH=119	6.0e-33	66%
RefSeq	Arabidopsis thaliana	NP_179564.1	60S ribosomal protein L31-1 [Arabidopsis thaliana]	7.0e-33	66%
RefSeq	Populus trichocarpa	XP_002330527.1	predicted protein [Populus trichocarpa]	2.0e-35	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPB8

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 341 and 287,

Fln protein: MVEKGKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFSQKAMGTADVRLDVKLNKAVWSRGxxxxxxxxxxxxxxxxxxxxAEVPPEGLSGVGTKIIEEED*

Protein Length: 110

Fln nts: CGTGTAAGCGGCTCTGTAGATTTTAGGGTTTAGTAGAGGAGCCGAGAGAAGACTCGAAGCGGAGCGGAGCAGGTGGCACG_-_ATGGTGGAGAAGGGAAAGAGCCGCAGGGACGAGGTCGTGACCAGGGAGTACACCATCAATCTTCACAAGCGTCTCCATGGCTGCACTTTTAAGAAAATGGCTCCAAAGGCCGTTAAGGAGATCAGGAAATTTTCCCAGAAGGCTATGGGAACCGCCGATGTGAGGCTTGATGTGAAACTTAATAAGGCTGTATGGAGCAGGGGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGAGGTGCCTCCTGAAGGGCTCAGTGGAGTAGGTACTAAGATTATTGAGGAGGAAGATTAA___TGTAATCACATCTTAAGTACATTTTGCTGTGAAGCGGAATGTAGACTATTATTTTCTTTATAGTGTTATGATTCTGAGGGCATTTAATGCTTTGACACTTCAGTTTTGTAGGACGTGAGGTTTCTTTTTCTGGATTTTTATGTTGACGAAGTAGCTTATTTGTTTATTGGTA

Fln Alignment:

Contig35436___MVEKGKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFSQKAMGTADVRLDVKLNKAVWSRGIPGSVTKKMPSRSSIRLxxKR-DEEDAKQELYSIVTVAEVPPEGLSGVGTKIIEEED
A9NPB8_______________MVEKGKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKVMGTTDVRLDVKLNKAVWSRGI-----RSVPRRMRVRIxxKRNDEEDAKEELYSIVTVAEVPPEGLSGLGTKIIEEED

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
75	33		66		0.997452
122	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain