SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35282

Length: 1670 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene35282

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Porin n=1 Tax=Prunus armeniaca RepID=Q9XH72_PRUAR	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	mitochondrial outer membrane	GO:0005741	Cellular Component	-
Sma3	voltage-gated anion channel activity	GO:0008308	Molecular Function	-
Sma3	anion transport	GO:0006820	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Porin, eukaryotic type	IPR001925	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G01280.1	VDAC1, ATVDAC1 voltage dependent anion channel 1 chr3:85754-87612 FORWARD LENGTH=276	61%
RefSeq	Arabidopsis thaliana	NP_186777.1	mitochondrial outer membrane protein porin 1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002312708.1	porin/voltage-dependent anion-selective channel protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU89

Fln msg:

Fln protein: MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQRSGKVELQYLHDYAGVSASIGLTPSPITHFSGAIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRNENTFTIGTQHALDPLTTVKGRLNNYGRAAAVLQHEWRPKSFVNLSGEVDTKALHNSAKVGLSLVLKP*

Protein Length: 278

Fln nts: ATGTAGTGGTTCAACGCAGAGTACGCGGGCCACACTCCTTTGCAAACTATGTATCGGGTGGCACATATCTTGCTTGCATTCATCGACGGCTGTGTGACTGAGACTTGTGGGCCAATCCAGGATCGGACGGTCGTGGTCGTTTGAATGGATTAAAACTTGTCTCTCCTAGGGTTTTAAGCAATCTTGGTGGGTTTGTAGAGAGAGCTTCTGTCATTTCCTACCGGGCCGGAGCTTCTTCCTTCTTCAGGGCTGTTTAACTCAAGGACGGTTCCCGTCTTCTGAAGGTGTTTTTTTTCTTGGAAAGAAATCGAAGGAATTTAGCC_-_ATGGGAAAGGGTCCTGGACTGTACTCCGACATTGGAAAGAAGACCAGAGATCTTCTCAACAAGGATTACAATTTCGATCAGAAGTTTAGTTTCACTTCCTACACATCCACTGGACTGGCATTTACATCTACTGGCATTAAGAAAGGAGAGTTTTTTCTGGGAGATCTGAACACTCAGCTGAAGAATAATAACATCACAACTGATATTAAAGTGGATACAAGTTCCAATTTATTTGCAACTGTGACAATTGATGAACCGGCACCAGGTGTGAAGGCAATATTTAGCTTTACTGTACCAGATCAAAGATCTGGAAAGGTTGAGCTTCAATATCTGCATGATTATGCAGGGGTCAGTGCAAGCATTGGCTTGACACCATCTCCAATAACACATTTCTCAGGAGCAATTGGAAATGATACTTTTTCTGTAGGGGGTGAAGTTTCGTTTGACACTGCATCGGGAAACTTCTTGAAATATGATGCAGGCTTGAGTTTTTCCAAGCCTGATTTCGTTTCTTCTTTGACCTTAACTGGTAAGGGTGACACCTTGAAGGCATCTTACTTGCATACTGTGAGTCCTCTGACAAAGACTGCTGTTGGAGCAGAGATATCACATAGCTTTTCAAGGAACGAGAATACGTTCACCATAGGCACTCAGCATGCTTTGGACCCACTGACAACAGTTAAGGGGCGCCTCAATAATTATGGAAGGGCAGCTGCAGTACTTCAGCATGAGTGGAGGCCTAAAAGTTTTGTTAATCTTTCTGGTGAGGTGGACACCAAAGCCCTTCACAACAGTGCAAAGGTGGGGCTATCTCTGGTTTTGAAGCCTTGA___AGGATATGCACTATTTGGTACAGATTTAAGCGAAGGTCTGTGCTAAATTTTGATTGGAATTTTTGAGTTTTTCCTTTCAGAATAATTATTTCAATGCCTGTGCTTTCTGTTGAGGCACAGAGCAGCTCAGCACCTTGACTTAATTAGCTATGTAATTTTGTGAGTCAGATGCTGTTAATTTTTTAAGGCACATGCTCTTGAAAATGGGTGTTGCCAAACATGGTTGGCTGGAGCTTCAATCTGGTTGAAAAGTTGTGAAACATTTTTGGTTTTAGGCAATGGTAAGAGTACTTGATGGCAATGCTGAGCTCTTCAGTATTTATCTTCAGTATTTGATATGGTGGGGTTTTGTTCAGGCCCTTCATTTCGTATTGTTTCAGCATTTGGACGAAGGCTTAGACCTTCCCATTTTGATTGAATTAATAAGTTGAGGGTGAATAATTTCTGGTAAGTAGTCTTCCTTTTTCTGCAGAAGCCTGACTTGTAATAATATGGTGCCAGACTTTGTGGTTATGT

Fln Alignment:

Contig35282___MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQRSGKVELQYLHDYAGVSASIGLTPSPITHFSGAIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRNENTFTIGTQHALDPLTTVKGRLNNYGRAAAVLQHEWRPKSFVNLSGEVDTKALHNSAKVGLSLVLKP
A9NU89_______________MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNVTTDIKVDTSSNLFATVTIDEPAPGLKTILSFTVPDQRSGKVELQYLHDYAGVSTSIGLTPSPITHFSGVIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTLTGKGDTLKASYLHTVSPLTKTAVGAEISHSFSRSENTFTIGTQHALDPLTTVKGRLNNYGKAAALLQHEWRPKSFVTLSGEVDTKALHNSAKVGLSLILKP

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
204			66	33	0.997452
271		36		63	1.0
396	10			90	0.90298
397	10			90	0.90298
398		90		10	0.90298
434			22	77	0.999999
920	75		25		0.996473
923	75		25		0.996473
1058		16	83		0.994512
1072	20			80	0.995493
1075			20	80	0.995493
1076	16		16	66	0.988813
1078	83			16	0.994512
1185		85		14	0.993533
1195	14			85	0.993533
1200	85	14			0.993533
1201	85		14		0.993533
1202		16		83	0.994512
1347			20	80	0.995493
1445		50		50	1.0
1528	33		66		0.997452
1587			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain