SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene35167

Length: 477 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene35167
AAGTGATGAGCAGTTGTTTGGTGTTAGCCCTCCACGATTTCGCTAAGCCTTTCACCTTGGAATGTGATGCATCGAGTGAAGTTGTTGGTCCAATGTTGTCACAGGATGGCCATCCCATTGCTTTTGAGAGTCGGAAACTCCTTCTGCATGAGATGTCGTATTCCATTTACGATAAGGAGATGTTGGCCATTATGCATGCATTGGCCAAGTTCTTGCAGTACTTGGTGGACAACTGATTCCGAGTGAAGACTGATCACAACAGTCTTCGTCATTTCATGGGACAATGGAACCTCAACGACAAGCAATAGAGATGGGTTAGCAAGGTGCATGCCTATGATTTTGACATAGAGTATGTGCGAGGAAAGCACAATGTAGTGGTCGATGGCATATCCAGGAGACCTGCGGCCCTCTCACTCATGAGCATTTGCCATGATTGGGACGCCCAACTGTAGCTAGAGTATTCCAAAGATAGACATT

Ace file of the UniGene sp_v3.0_unigene35167 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative reverse transcriptase n=1 Tax=Petunia x hybrida RepID=Q6VPE7_PETHY	-	-	8.0e-25	41%
FL-Next	tr=Putative reverse transcriptase; Petunia hybrida (Petunia).	-	-	0.0	41%

Source	Gene names
Sma3	VITISV_012031; VITISV_042679;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q6VPE7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 119 aas, your sequence is shorter than subject: 150 - 435

Fln protein: VMSSCLVLALHDFAKPFTLECDASSEVVGPMLSQDGHPIAFESRKLLLHEMSYSIYDKEMLAIMHALAKFLQYLVDN*FRVKTDHNSLRHFMGQWNLNDKQ*RWVSKVHAYDFDIEYVRGKHNVVVDGISRRPAALSLMSICHDWDAQL*

Protein Length: 151

Fln nts: AAGTGATGAGCAGTTGTTTGGTGTTAGCCCTCCACGATTTCGCTAAGCCTTTCACCTTGGAATGTGATGCATCGAGTGAAGTTGTTGGTCCAATGTTGTCACAGGATGGCCATCCCATTGCTTTTGAGAGTCGGAAACTCCTTCTGCATGAGATGTCGTATTCCATTTACGATAAGGAGATGTTGGCCATTATGCATGCATTGGCCAAGTTCTTGCAGTACTTGGTGGACAACTGATTCCGAGTGAAGACTGATCACAACAGTCTTCGTCATTTCATGGGACAATGGAACCTCAACGACAAGCAATAGAGATGGGTTAGCAAGGTGCATGCCTATGATTTTGACATAGAGTATGTGCGAGGAAAGCACAATGTAGTGGTCGATGGCATATCCAGGAGACCTGCGGCCCTCTCACTCATGAGCATTTGCCATGATTGGGACGCCCAACTGTAGCTAGAGTATTCCAAAGATAGACATT

Fln Alignment:

Contig35167___MSSCLVLALHDFAKPFTLECDASSEVVGPMLSQDGHPIAFESRKLLLHEMSYSIYDKEMLAIMHALAKFLQYLVDN*FRVKTDHNSLRHFMGQWNLNDKQ*RWVSKVHAYDFDIEYVRGKHNVVVDGISRRPAALSLMS
Q6VPE7_______________LSTAPLLQLPDFGKAFEVECDASGVGIGGVLMQDSKPIAYFSEKLKGASLNYSTYDKEVYALVRALAHWQHYLWPREFEIKSDHESLKHLRGQEKLNKRHAKWVEFIESFPYVIQYKKGKDNVVADALSRKFALATTLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain