SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34840

Length: 1034 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34840

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial dicarboxylate carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SXH6_RICCO	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Mitochondrial dicarboxylate carrier protein, putative	-	-	2.259e-14	-

Source	Gene names
Sma3	ACI36; AT4G24570; AT4g24570; At2g22500; At2g22500/F14M13.10; At3g54110; At4g24570; At5g09470; At5g19760; At5g58970; AtUCP2; CHLREDRAFT_191516; DiDi 8A-1a; F22K18.230; F24B22.70; GSVIVT00011464001; GSVIVT00015121001; GSVIVT00021452001; GSVIVT00024175001; G

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	NAD+ kinase activity	GO:0003951	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	mitochondrial transport	GO:0006839	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial brown fat uncoupling protein	IPR002030	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Inorganic polyphosphate/ATP-NAD kinase, predicted	IPR002504	-	-
Sma3	ATP-NAD kinase, PpnK-type, all-beta	IPR017437	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G24570.1	DIC2 dicarboxylate carrier 2 chr4:12686546-12687487 FORWARD LENGTH=313	75%
RefSeq	Arabidopsis thaliana	NP_194188.1	dicarboxylate carrier 2 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002306542.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSC7

Fln msg: Overlapping hits, possible frame ERROR between 372 and 365,

Fln protein: CSTHPLDLIKVRMQLQGEQTVRPAFAFANVGAGYPVTELAHQNRVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVQKITAGLIAGGIGAAVxxxxADVAMVRMQADGRLPVAQRRNYTSVGDAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISHDIMKDGLGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGEPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTIVLFVTLEQVRKIFKDFDF*

Protein Length: 301

Fln nts: TGTAGCACGCACCCTCTGGATCTGATAAAGGTGCGCATGCAGCTACAAGGCGAACAAACTGTTCGCCCCGCATTCGCCTTTGCTAATGTGGGCGCCGGTTACCCGGTGACGGAATTAGCCCACCAGAATAGGGTGGGACCAATCTCTGTGGGAATCCGCGTGGTTCAGACGGAGGGAGTGTCTGCGCTCTTTTCCGGTGTATCTGCAACCATGCTCCGGCAGGTACTGTACTCGACCACTCGCATGGGTTTATACGAGATTCTGAAGGAGAAATGGCGAGAGCCGGGTTCGAAACCGGGAAACCTACCACTTGTCCAGAAGATCACCGCCGGTTTGATCGCTGGAGGCATCGGCGCCGCTGTGxxxxxxxxxxxxGCTGATGTGGCGATGGTGAGAATGCAAGCCGATGGGCGCCTCCCGGTTGCCCAGAGGCGCAACTACACGAGCGTTGGCGATGCCATCGGTCGCATGGTTCGACAGGAGGGTGTCACTTCGCTATGGACAGGGTCATCCTTAACGGTCCAGAGGGCCATGATCGTGACGGCCTCGCAGCTGGCCTCCTATGATCAGATCAAGGAGACCATCATCTCACATGATATTATGAAGGACGGTCTAGGCACGCATGTCACAGCTAGCTTCAGTGCAGGGTTTGTGGCTGCCGTGGCTTCGAATCCCGTGGACGTTATCAAGACCCGGATCATGAATATGAACCCTAAACCAGGAGAGCCTGCACCTTATTCCGGAGCCCTGGATTGTGCCATGAAGACCATAAAGGCGGAAGGCCCTATGGCTCTTTACAAGGGATTTATTCCCACTGTGACGAGACAAGGTCCTTTTACTATCGTTCTTTTCGTCACTCTGGAGCAAGTTAGGAAGATTTTTAAAGATTTCGATTTTTAGATTCTATTTTATATCATAGGTAACTCTGCTACCTATTCAGTATTAGGGGTTCTGTATGCCTGTAGTTTTGGTCCCTGCTTGCAGATCTTGATGATGATGATGAAAAATATTGATTAAATAAATATATTATTAGTTT

Fln Alignment:

Contig34840___CSTHPLDLIKVRMQLQGEQTVRPAFAFANVGAGYPVTELAHQNRVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVQKITXXXXXXXXXXXVxxxADVAMVRMQADGRLPVAQRRNYTSVGDAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISHDIMKDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRIMNMNPKPGEPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTIVLFVTLEQVR
C0PSC7_______________CSTHPLDLIKVRMQLQGEQNVRPAFAFANVGAGCPAAELAHQ-KVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKIAAGLTAGGIGAAVxxxADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISRDIMKDGLGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGQPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTVVLFVTLEQVR

SNPs (tot: 3)

Position	C %	G %	T %	Probability
450	33	66		0.997452
454	33		66	0.997452
964	33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
987	1001	TGA TGA TGA TGA TGA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain