SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34802

Length: 1279 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34802

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein phosphatase 2C 55 [Arabidopsis thaliana] sp\|Q9SUK9.2\|P2C55_ARATH RecName: Full=Probable protein phosphatase 2C 55; Short=AtPP2C55 gb\|AEE83773.1\| putative protein phosphatase 2C 55 [Arabidopsis thaliana]	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Protein phosphatase 2c, putative	-	-	1.697e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	2.507e-13	-

Source	Gene names
Sma3	At4g16580; At5g66720; BIPP2C1; CHLREDRAFT_142396; FCAALL.400; GSVIVT00014655001; GSVIVT00015480001; GSVIVT00015482001; GSVIVT00024978001; GSVIVT00024980001; GSVIVT00025321001; LOC_Os03g59470; LOC_Os10g22460; LYC_68t000008; MSN2.11; OJ1003C07.6; OSJNBa0028

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR010822	-	-
Sma3		IPR014045	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G16580.1	Protein phosphatase 2C family protein chr4:9341152-9342555 REVERSE LENGTH=467	68%
RefSeq	Arabidopsis thaliana	NP_193391.3	putative protein phosphatase 2C 55 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002327697.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACC8

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 318 - 238

Fln protein: MGGFQFFSNGSWLRWVWGPESKGFHNFTAFLNTAARASPDITFDGSAKYDNLDDSSNASDQALLGDRVLKLLSGACYLPHPDKEATGGEDAHFICTDEQAIGVADGVGGWAQMGVNAGDYARELMSHSVAAIQEEPRGSIDLARVLEKAYLSTKARGSSTACILALSDQGLHAVNLGDSGFLVVRDGCTILRSPVQQHDFNLTFQLESGGGSDLPSSAQVFNVQVAPGDVIIAGTDGLFDNLYNNEVTAVVVHAVRAGLGPQVTAQKIAALARQRAQDTHRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVSSSNSN*

Protein Length: 319

Fln nts: _-_ATGGGTGGCTTTCAATTTTTTAGTAATGGAAGCTGGCTTCGGTGGGTTTGGGGGCCAGAGTCAAAAGGATTTCACAATTTCACTGCCTTCTTGAATACAGCTGCTCGGGCATCTCCAGACATTACTTTTGATGGTTCTGCTAAATATGATAATCTCGATGACTCTTCTAATGCTTCAGATCAGGCACTTCTTGGCGACAGAGTATTGAAATTACTATCAGGTGCATGCTACCTCCCACACCCGGACAAGGAGGCTACAGGTGGTGAAGATGCTCACTTTATTTGTACAGATGAGCAAGCTATTGGGGTTGCTGATGGTGTTGGAGGTTGGGCTCAGATGGGTGTTAATGCTGGTGACTATGCTCGTGAACTCATGTCTCATTCTGTTGCTGCAATTCAAGAGGAACCCCGAGGTTCTATCGATCTTGCTAGAGTCTTGGAGAAAGCTTACTTAAGTACAAAAGCCAGGGGATCATCAACAGCTTGTATATTGGCCCTGTCAGATCAGGGTTTGCATGCTGTAAATTTGGGGGATAGCGGATTTTTAGTAGTAAGAGATGGATGCACGATCTTAAGGTCTCCTGTACAGCAACACGACTTCAATTTAACATTTCAACTTGAAAGTGGTGGTGGCAGTGATCTCCCCAGCTCTGCTCAGGTTTTCAACGTTCAGGTTGCTCCTGGGGATGTAATTATTGCTGGTACAGATGGTCTCTTTGATAACCTATACAATAATGAAGTGACTGCTGTAGTAGTTCATGCTGTAAGAGCTGGGCTAGGACCTCAGGTTACAGCTCAGAAAATTGCTGCACTTGCCAGGCAGAGAGCACAGGATACACACCGGCAGACCCCTTTCTCCACTGCTGCCCAGGATGCAGGTTTTCGATATTATGGTGGGAAACTGGATGATATCACTGTTGTTGTGTCGTATGTTTCAAGCTCTAATTCCAACTAGGGGATTCAAGTTTGATGTTTTTGATAATTAGTGATTCTGAGGAAGGATTGGTGATGTTCTGGATCCATTCAAGGCTATCCAAATTGGACCACTGATGTAAACTACCAGCTGTAAACATGCGAATATCAACCATTATTTTTGCCTCTGTAGTGGAAGTCTCATTAAATCTCACAGCCTCTGCTGAGAGTCTGTGATAAGCAGATCAACTTCTCCTTATTGTATGACTCCTGTTTGTTCGGGAGCCACTGGACATGTATCCTACCATAACCAAATTGCAAAGTAACTGCGGAAAATGCAGAATATTTGCTGTATTATATTAAACTTT

Fln Alignment:

Contig34802___LPHPDKEATGGEDAHFICTDEQAIGVADGVGGWAQMGVNAGDYARELMSHSVAAIQEEPRGSIDLARVLEKAYLSTKARGSSTACILALSDQGLHAVNLGDSGFLVVRDGCTILRSPVQQHDFNLTFQLESGGGSDLPSSAQVFNVQVAPGDVIIAGTDGLFDNLYNNEVTAVVVHAVRAGLGPQVTAQKIAALARQRAQDTHRQTPFSTAAQDAGFR-YYGGKLDDIT
D5ACC8_______________LPHPTKASTGGEDAYFV-TRNNWVGVADGVGQWALEGINSGLYAQELMENCRKLVSEESP-SADPRQVLVMSAMEAKSAGSSTVLVASLIGQTLHVVNLGDSGFIVIRGGSVIVKSSPMTHGFNFPYQIERGDDPSL--LLESYDITLNDGDVIVTATDGLFDNLYDHEIASIIQNSLQSGLGPKEMATLLAEKAHERGKSTSGSSPFSDAARAVGYNTYIGGKLDDVT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
508		20	80		0.995493
509	20		80		0.995493
985	90			10	0.999898
1182		80		20	0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain