SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34781

Length: 1708 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34781

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	splicing factor 1 [Arabidopsis thaliana] ref\|NP_851169.1\| splicing factor 1 [Arabidopsis thaliana] ref\|NP_001032055.1\| splicing factor 1 [Arabidopsis thaliana] dbj\|BAA97393.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN13087.1\| unknown protein [	-	-	2.0e-20	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	Gene names
Sma3	OSJNBa0044M19.2; Os04g0385700; OsI_15642; OsJ_14553; RCOM_1500890;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51300.1	splicing factor-related chr5:20849881-20852295 REVERSE LENGTH=804	2.0e-22	54%
RefSeq	Arabidopsis thaliana	NP_199943.1	splicing factor 1 [Arabidopsis thaliana]	2.0e-22	54%
RefSeq	Populus trichocarpa	XP_002303489.1	predicted protein [Populus trichocarpa]	2.0e-21	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH8

Fln msg: Separated hits, possible frame ERROR between 193 and 457, and possible frame ERROR between 1002 and 1005, your sequence is shorter than subject: 379 - 970

Fln protein: PEINKVSLEKSGSGIPGQSTQPLGLRDNYLSWLAGGLEHAENGSSGIGPDISKGREFGTSSVQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFFKIYNIQCAAQAIAHMNGYRLEDKTLAVRVAGWPPGSEMGPAEDLYTSDKQQPPRLPVHSGDYAHIPWNPSTRPVSSSPYNLYSNNNGSGMPHHSGNPLQGGTFNSLPATSYRTYDLRSAESSSGMHGPPRSQPVLDNVHVFSMSKLNVHSADAMSHFSPNQSRISTYYAPPSVPSGSAYxxSRSQASLMRGLGTTPWTSNLFPSGHEKKSVELEYESFISEMGL*

Protein Length: 380

Fln nts: ACCAGAGATAAATAAGGTTTCTTTGGAAAAGAGTGGGTCCGGGATTCCAGGACAGTCCACTCAACCACTGGGTCTTAGAGACAATTATCTGTCATGGTTAGCTGGAGGTTTGGAACACGCAGAAAATGGAAGTTCTGGAATAGGACCAGATATAAGCAAGGGTCGTGAATTTGGGACCTCTTCTGTACAAGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTTTTTAAAATTTATAACATCCAATGTGCTGCCCAAGCTATTGCACATATGAATGGCTACAGGTTGGAAGACAAGACTTTAGCTGTAAGGGTGGCAGGATGGCCTCCTGGCTCTGAGATGGGACCTGCAGAAGATCTTTACACTTCTGATAAGCAACAACCACCGAGATTGCCTGTCCATTCTGGTGATTATGCACACATACCATGGAATCCTTCAACTAGGCCTGTATCATCATCTCCTTATAATCTTTATTCTAATAACAATGGTTCTGGCATGCCACACCATAGTGGCAATCCTTTGCAAGGAGGAACTTTCAACAGTCTCCCAGCTACTTCATATCGTACATATGATCTCCGTTCGGCAGAATCATCTAGTGGCATGCACGGGCCACCTAGATCTCAACCAGTGCTAGACAATGTCCATGTTTTCTCGATGTCAAAATTAAATGTCCATTCAGCAGATGCCATGAGCCATTTTTCTCCAAACCAATCCAGGATTTCTACATACTATGCACCTCCATCAGTTCCATCGGGCAGTGCATATTxxxAGTCACGATCACAAGCTTCATTAATGAGAGGTTTGGGTACTACTCCATGGACTTCTAACCTTTTTCCTTCTGGACATGAGAAGAAATCTGTGGAATTGGAATACGAAAGCTTTATATCTGAAATGGGGCTGTGACATGAGAACATTTCAGGGATATATAATATTTCATTCGAAGACTAAAATTTGAGAATCTATATCAAACAGAAGTAATTAATTTCTGATTGAATTTTTACAAAGTAAATTACTTTCACTGTCTGCTTCTGAATTTTTGCGAGCAAATTGTTGATAAGAAAGCCGTGATTTAGTTCAACCAGGATACACACTTTGTTCCAAGGGAAATTCAGCAACACCTTTGAGGTACTAGAGAAAACGACATCTAAGGTTATTGATGAAGGCCAGATATTGGCAGTGTTTGGAAAGATTCCTCCAGTTACATTCAATACATCTTGGAACTACACAACTTACCAACAAAGTTGTTCCGATGTTTCTGCAGTTATAATATACGCACAGAGTTGCTTTGTATCATGTTGAATTCGTGTTTCTGGAATTACAACATTGAGTGTCTTGGCACTCAGCTGTCCATTGCCTTTTCATTCCCTTTCTATTCTCTCTTCTTGAAGGTGAATATCTGTACTACTTATGAAATTATGAATAATATGTTGATCCTATTTTGTAACCTGAGATAATTGGTCAGTTTCTTGAAATGC

Fln Alignment:

Contig34781___EINKVSLEKSGSGIPGQSTQPLGLRDNYLSWLAGGLEHAENGSSGIGPDISKGREFGTSSVQGSRLHGYSPNFSHVGLESSFDSLSFSHMGLGPRFEHNYGKEIDHSNVYVGYLPPTMEEEQLIKLFSPFGRIVEAKVIRDDVKGSSKGYGFLKFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFFKIYNIQCAAQAIAHMNGYRLEDKTLAVRVAGWPP-GSEMGPAEDLYTSDKQQPPRLPVHSGDYAHIPWNPSTRPVXXXXXXXXXXXXXXXMPHHSGNPLQGGTFNSLPATSYRTYDL-RSAESSSGMHGPPRSQPVLDNVHVFSMSKLNVHSADAMSHFSPNQSRISTY--YAPPSVPSGSAYSxSRSQASLMRGLGTTPWTSNLFPSGHEKKSVELEYESFISEMGL
B8LRH8_______________EIKKVSVEKSRYGLPRQSTQPPGPRDNYMSWLAGGLEHTENGSAGIGPDIRKGGGFGTSSVQGSRPYGYSPYSSHVGLESSFDSPSFSHKGLGSHFEHNHGKEIDHSTVYVGYLPPTMEEEQLIKLFSSFGRIVEAKVIRDDVKGSGKGYGFVKFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFVKFNNIHCTAQAIVHMNGYRLEGKTLAVMASGWPPSGSGVGPAEALYTFDKQQSPRLPVHSGDYAQPSWSAPTRPVSSFPYNYYSDNNGSGMPSHSVSPLQGGTFKSLPATSYCTYDLYQMPLPSSGMQGPLRSQKVLDNVHDSLISKLNVHSADAMSQFSPNQTRISTYQHYAPPSIPSGGAYSxSPSRGSLMGGLGTPPLSSSLFSSGYEKKAMELEYERFLSESGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain