SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34593

Length: 283 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene34593
CAATTTGTAGAGATCTCTTCAGCTAGGCAGTACTTTCGACTTCCTGGAAATTGACCTAGATTCAGGGTACAGGAATAAATAAAATGGGGCAAATGTTCTGTTGTATACAAGTGGATCAATCAAAAGTGGCAATGACAGAGAAATTTGGACGTTTTAATGACGTTCTTGAGCCAGGATGCCACTGTCTGCCATGGGTTTTTGGGTACAAAGTTGCGGGTTATCTTTCCTTACGAGTACAAAAGCTGGATGTCCGGTGCGAGACAAAGACAAAGGATAATGTATT

Ace file of the UniGene sp_v3.0_unigene34593 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01145, Band_7, SPFH domain / Band 7 family	-	-	0.0001	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Hypersensitive-induced response protein	-	-	2.089e-30	-

Source	Gene names
Sma3	AT1G69840; At1g69840; At3g01290; At5g62740; GSVIVT00000093001; GSVIVT00028994001; HIR1; HIR2; HIR3; LOC_Os10g32700; Lj-HIR1; MQB2.6; OJ1051_A08.5; OJ1198_B10.17; OSJNBa0071K18.18; Os01g0588400; Os05g0591900; Os06g0136000; Os08g0398400; Os09g0361200; Os10g

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Band 7 protein	IPR001107	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G62740.1	HIR1, ATHIR1 SPFH/Band 7/PHB domain-containing membrane-associated protein family chr5:25201320-25202535 FORWARD LENGTH=286	9.0e-32	77%
RefSeq	Arabidopsis thaliana	NP_201080.1	Hypersensitive-induced response protein 1 [Arabidopsis thaliana]	1.0e-31	77%
RefSeq	Populus trichocarpa	XP_002323833.1	predicted protein [Populus trichocarpa]	2.0e-32	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU93

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 66 - 284

Fln protein: MGQMFCCIQVDQSKVAMTEKFGRFNDVLEPGCHCLPWVFGYKVAGYLSLRVQKLDVRCETKTKDNV

Protein Length: 67

Fln nts: CAATTTGTAGAGATCTCTTCAGCTAGGCAGTACTTTCGACTTCCTGGAAATTGACCTAGATTCAGGGTACAGGAATAAATAAA_-_ATGGGGCAAATGTTCTGTTGTATACAAGTGGATCAATCAAAAGTGGCAATGACAGAGAAATTTGGACGTTTTAATGACGTTCTTGAGCCAGGATGCCACTGTCTGCCATGGGTTTTTGGGTACAAAGTTGCGGGTTATCTTTCCTTACGAGTACAAAAGCTGGATGTCCGGTGCGAGACAAAGACAAAGGATAATGTATT

Fln Alignment:

Contig34593___MGQMFCCIQVDQSKVAMTEKFGRFNDVLEPGCHCLPWVFGYKVAGYLSLRVQKLDVRCETKTKDNV
A9NU93_______________MGQLFCCVQVEQSEVAMKETFGRFNEVLEPGCHCLPWIFGQQIAGHLSLRVQKLDVRCETKTKDNV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain