SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34395

Length: 1388 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34395

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thylakoid-bound ascorbate peroxidase n=2 Tax=Cucurbita cv. Kurokawa Amakuri RepID=O04873_9ROSI	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant ascorbate peroxidase	IPR002207	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77490.1	TAPX thylakoidal ascorbate peroxidase chr1:29117688-29120046 FORWARD LENGTH=426	66%
RefSeq	Arabidopsis thaliana	NP_177873.1	L-ascorbate peroxidase [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002307442.1	predicted protein, partial [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXJ7

Fln msg:

Fln protein: MAMALGFAAGSSLTLQHNSTRFPKISTSRSSRGRCRVGYVSTVICFASDPQQLKQARQDLNDLIKTTRCNPLLIRLGWHDAGTYDKNIQEWPKCGGANGSLHFEIELNHKANAGLVNGLKLLQPIKDKYPNITYADLFQLASATAIEDAGGPEIPMKYGRLDAPRPEDCPPEGKLPDAGPPSPAAHLRDIFYRMGLTDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTVEWLKFDNSYFKEIKEQRDQDLLVLPTDAVLFEDPGFKVYAEKYAVDQDAFFKDYAEAHAKLSNLGAKFDPVDGFSIADAPQTPAPEKFVAAKYSYGATEDKKELSEAMKAKMRAEYLALGGSPNKPLQSNYFLNIIIFVAVLAVLASFFGGN*

Protein Length: 396

Fln nts: ATGGGGGCAAAATTCTCCCTGCTGGAGCAGCTTATCAACAAGCTGCGAATCCTTTTGTGGAAAATCA_-_ATGGCTATGGCTTTGGGGTTTGCAGCAGGTTCCTCTCTGACCCTCCAGCACAACTCCACACGTTTTCCGAAGATATCAACTAGCAGAAGCAGCAGGGGAAGGTGCCGAGTAGGCTATGTGTCTACAGTCATTTGCTTTGCATCCGATCCTCAGCAACTCAAACAGGCCAGACAGGACCTGAACGACCTCATTAAAACCACTCGCTGTAATCCACTTCTAATTCGATTGGGATGGCATGATGCTGGAACATATGACAAGAACATTCAAGAGTGGCCAAAGTGTGGTGGAGCAAATGGGAGCTTGCACTTTGAGATAGAACTAAACCACAAAGCAAATGCTGGTCTTGTAAATGGATTGAAGCTCTTACAGCCCATCAAAGACAAGTATCCAAATATTACCTATGCAGATTTGTTCCAGTTAGCCAGCGCCACAGCTATTGAGGATGCTGGAGGCCCTGAAATTCCTATGAAATATGGGCGACTGGATGCACCTAGACCTGAAGATTGTCCACCAGAAGGAAAGCTCCCAGATGCTGGTCCTCCTTCACCAGCTGCTCATCTGCGTGATATCTTCTACAGAATGGGGTTGACAGATAAGGAAATTGTTGCATTATCAGGTGCGCACACCCTTGGAAGATCCAGGCCAGATCGTAGTGGCTGGGGCAAGCCAGAAACCAAATACACAAAAGATGGTCCAGGAGCACCAGGAGGTCAATCCTGGACAGTAGAGTGGCTGAAATTTGATAATTCTTACTTCAAGGAGATAAAAGAGCAAAGGGATCAAGATCTGCTGGTATTACCAACTGATGCTGTTCTTTTTGAAGATCCTGGTTTCAAGGTATATGCTGAAAAATATGCAGTTGATCAGGATGCTTTTTTCAAGGATTATGCAGAGGCTCATGCAAAACTGAGTAATCTCGGTGCCAAGTTTGATCCTGTTGATGGATTTTCCATTGCGGATGCTCCTCAAACACCAGCACCAGAGAAGTTTGTAGCTGCCAAGTACTCTTATGGTGCAACTGAAGACAAGAAGGAACTGTCTGAGGCCATGAAGGCAAAAATGCGAGCTGAATACCTAGCTTTGGGGGGAAGCCCGAATAAGCCTCTCCAGTCTAATTACTTTCTCAACATCATCATTTTTGTCGCTGTGTTAGCAGTTTTGGCATCCTTCTTTGGAGGAAATTGA___TTTTCACAGGCATTTTATTTTCTTCAAAGTGATCAAATAATGAAGCCATATCAGGCTAAGAGGTTCCTTTTCTGAGTTGGTGATGGTATTACTCATTGCGGACAAGGAACACTTCAATTATAAGAGAAAATGTGTT

Fln Alignment:

Contig34395___MAMALGFAAGSSLTLQHNSTRFPKISTSRSSRGRCRVGYVSTVICFASDPQQLKQARQDLNDLIKTTRCNPLLIRLGWHDAGTYDKNIQEWPKCGGANGSLHFEIELNHKANAGLVNGLKLLQPIKDKYPNITYADLFQLASATAIEDAGGPEIPMKYGRLDAPRPEDCPPEGKLPDAGPPSPAAHLRDIFYRMGLTDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTVEWLKFDNSYFKEIKEQRDQDLLVLPTDAVLFEDPGFKVYAEKYAVDQDAFFKDYAEAHAKLSNLGAKFDPVDGFSIADAPQTPAPEKFVAAKYSYGATEDKKELSEAMKAKMRAEYLALGGSPNKPLQSNYFLNIIIFVAVLAVLASFFGGN
A9NXJ7_______________MALALGFAAASSLFLPHNFTRFPKISTSSSSRGRCRVRHVSTVICFASDPQQLKQARQDLNDLIKTTRCNPLLIRVGWHDAGTYDKNIQEWPKRGGANGSLHFEIELSHKANAGLVNALKLLRPIKDKYPNITYADLFQLASATAIEEAGGPVIPMKYGRLDAPKPEDCPPEGKLPDAGPPSPAAHLRDVFYRMGLTDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVEWLKFDNSYFKEIKEQRDQDLLVLPTDAVLFEDPGFKVYAEKYAVDQDAFLKDYAEAHAKLSNLGAKFDPVDGFSIADAPQTPIPEKFVAAKYSYGASEDKKELSETMKAKMRAEYLAFGGSPNKPLQSNYFLNIIIFVAVLAVLASFFGGN

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
735	12	87			0.992554
785	10			90	0.90298
786	10		90		0.90298
787			90	10	0.90298
788	90		10		0.90298
789		90		10	0.90298
894	10	90			0.90298
896			90	10	0.90298
1097	75		25		0.996473
1098	75	25			0.996473
1099			75	25	0.996473
1100			75	25	0.996473
1104		25		75	0.996473
1105	25		75		0.996473
1109		25	75		0.996473
1113		75		25	0.996473
1167	83		16		0.994512
1168	83		16		0.994512
1192		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain