SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34390

Length: 1312 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34390

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	53%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002308240.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU86

Fln msg:

Fln protein: MSIEEDDAFGACAGNLNIHAEQRLEGKVAIITGGASGIGEATVRLFTKHGGKVIIADVADVAGKKLAESLSPPAIFVHCDVTNEQDVGAAVDLAVEKHGQLDIMFNNAGIIAPGKSVAEFDMDQFDRVMKVNVRGVMVGMKHAARVMIPRKKGTIVNTASITSVIGGLCPYDYTTSKHAVIGLTRNGAAELGKYGIRVNAVSPYGLPSDLTVGYFKKEGDPSAFSKEVDKPAVTDFCTRVANLEGTVLTAEDVAEACLYLASDESKYVSGHNLVVDGGISVVNHSWGTYR*

Protein Length: 292

Fln nts: ATGGGGAGAAATATCTGCAGCAACCTCTCCCTGTAATTGCATCTGAGGCTTCCTGCGTCATCTAACTACCCAAATCTCGTTCCCAACC_-_ATGTCTATCGAAGAGGACGATGCATTTGGTGCCTGTGCTGGCAATCTCAACATTCATGCGGAGCAACGACTGGAGGGCAAGGTCGCAATAATAACGGGAGGAGCATCTGGCATCGGAGAAGCCACCGTTCGGCTCTTCACAAAGCACGGAGGCAAAGTCATAATCGCGGACGTTGCCGACGTAGCTGGGAAAAAGCTGGCCGAATCCCTTTCTCCTCCCGCAATTTTCGTGCACTGCGATGTGACCAATGAGCAAGACGTGGGCGCAGCAGTGGATTTGGCCGTAGAGAAACACGGTCAACTCGATATAATGTTTAACAACGCAGGAATAATAGCCCCAGGTAAAAGCGTAGCAGAGTTTGACATGGATCAATTCGATCGAGTGATGAAAGTAAACGTGAGAGGAGTGATGGTGGGCATGAAGCACGCTGCCCGCGTGATGATTCCGCGGAAGAAGGGCACCATAGTCAACACTGCCAGCATTACCAGTGTTATAGGAGGACTTTGTCCATACGACTACACCACCTCCAAACATGCAGTGATAGGGCTGACGAGGAACGGCGCAGCTGAGCTTGGGAAATACGGGATCCGAGTCAACGCTGTGTCTCCTTATGGACTGCCCTCGGATCTTACTGTAGGGTATTTCAAGAAGGAAGGTGACCCCTCCGCATTTTCTAAAGAAGTGGATAAGCCCGCTGTGACGGACTTCTGCACCAGAGTTGCCAACTTAGAGGGAACGGTTCTTACAGCGGAGGATGTTGCAGAGGCATGTCTGTACTTGGCGAGCGATGAGTCTAAATATGTGAGCGGGCATAACCTTGTTGTCGACGGAGGAATCAGTGTTGTTAATCACTCCTGGGGAACCTACCGATGA___TAACTGAATGCTACTATTTGTTAATGAAATTAGCTCAGAGTCGAGTCGTAGTCCTACTATATAAATAACGCCGGTTCACAGCCGCTTCATCTGCTGGTTTTGGATTCCCTCTGAAATCGTTGTGACTTTTTAGTAACGTAGCCCTACTATATAAATAGTTGTGGTTCACCACTCCGTAACCCTACGATATAAATAATTACAGTTCAGCTCTGGTTCGTTTGATGGTTTTGGTAAATGGCTGTCGCTTTCGTTAACTTGAAAGATGTCCTTTTGGCATTACATATTAATAATTATATATGATCACATACGTCATCATGGTATGTGATTTAAAAATATATATATTATTTGGGC

Fln Alignment:

Contig34390___MSIEEDDAFGACAGNLNIHAEQRLEGKVAIITGGASGIGEATVRLFTKHGGKVIIADVADVAGKKLAESLSPPAIFVHCDVTNEQDVGAAVDLAVEKHGQLDIMFNNAGIIAPGKSVAEFDMDQFDRVMKVNVRGVMVGMKHAARVMIPRKKGTIVNTASITSVIGGLCPYDYTTSKHAVIGLTRNGAAELGKYGIRVNAVSPYGLPSDLTVGYFKKEGDPSAFSKEVDKPAVTDFCTRVANLEGTVLTAEDVAEACLYLASDESKYVSGHNLVVDGGISVVNHSWGTYR
A9NU86_______________MSNQEADAIGATVGNLDIHVEQRLNGRVAIITGGASGIGEAIVRLFTKHGAKVIIADIADEAGGKLAESLSPRGTYVHCDVSKEQDMSAAVDLAMEKHGQLDIMYNNAGILAAGKSVAEYDMEQFDRVMRVNVRGVMLGIKHAARVMIPRKKGCIINTASVVSIVGGLTPYSYTASKHAVIGLTKNGAAELGKYGIRVNAVSPYGLATALTVEYF-KEGDASSSASEIDKAAVDAFCDGVANLEGTILKVEDVAEAGLYLASDEAKYVSGHNLVVDGGITVVNHSWKTYR

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
237			88	11	0.999937
238	88	11			0.999937
244	88	11			0.999937
253		88		11	0.999937
254	11		88		0.999937
255		88		11	0.999937
260			88	11	0.999937
861		2		97	0.927345
1032		97		2	0.936149
1091		3		96	0.999965
1138		2		97	0.927345
1160	87		12		1.0
1164		8		91	1.0
1177		97		2	0.969538
1178	40		59		1.0
1181		5	38	55	1.0
1190			9	72	0.999994
1230	16			83	0.994512
1282		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain