SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34383

Length: 2062 nt

UniGene Fasta

>sp_v3.0_unigene34383
TTTTACACTTTATGAAGTGGGTGGAGACACCAGCTCCTATGGGTGGTGGAGGTGGCCCAGATTGGTGTGCCAAATATATAAAAGCAGTAATGAATATTGGAGGTCCATTCCTTGGTGTCCCAAAAGCTGTCACAGGACTTCTTTCAGCTGAAGCTAAGGATGTTGCTGTTGCTAGAGGGGTTACTCCTGGTGTTGTAGACAATGAGTTTTTTGGACGTCATACTCTGCAGCATCTGATGCGCATGACTCGCACCTGGGATGCAACCATGTCAATGTTACCAAAAGGTGGTGAGACAATTTGGGGTGATCTAGACTGGGCACCAGAAGAAGGATATCAATGCCGTCCCAAGGACAAACAACAGGAGGTACATGATGAAAGGAATTTGAGTACTGCAGCAATAAGCTCTCAAAGGGAACGTGGAATGCATACTGGAAGGATTATTTCATTTGGGAAGGATGCAGCAGAACTACCTTCATCCGAGCTAGTCATGAAAGATTACATGGCCAGTTCTAAAAATAATGACCTCACTAAGTCAAATGTATCCTGTGGAGATGTCTGGACTGAGTATCATGAAATGGCTTGGGAGAGTATTGAGGCTGTTGCTGACCATAAAGTATACACAGCAGAAACTGTCTTAGATCTGCTACACTTTGTTGCCCCAAGATTAATGCAACGAGGAGATACTCATTTTTCTTATGGCATTGCTGACAATTTGGATGATCCAAAATATAAGCATTACAAGTACTGGTCTAATCCTCTTGAAACAAAATTGCCAAATGCCCCGGATATTGAGATATACTCTATGTATGGTGTTGGAATTCCTACAGAAAGAGCATATGTTTATAAATTGTCCCCTTCTGCTGACACATGCTACATACCATTTCGAATTGACACTTCAGCAGATGGGGGGCAAGCAGAGAGCTGCCTAAAAGGAGGCGTGTACGTAACTGAAGGTGATGAAACTGTGCCATCTCTCAGTGCAGGATTCATGTGTGCCAAAGGCTGGCGAGGGAAAACTAGATTTAATCCTTCAGGCATGTCAACTTATATAAGGGAGTACCTCCATGCCCCACCTGCAAACATATTAGAAGGTCGTGGTACCCAAAGTGGTGCTCATGTTGACATAATGGGAAACTTTGCTTTGATAGAGGATATCATAAGAGTAGCAGCAGGTGCAAATGGGGAAGATATAGGTGGAGATCAAGTGTATTCTGGTATTCTAGAATGGTCTGAGAAGATTAAACTAAAGCTATAAAGTGTTCACATTATTTGTGGCATTTTCTGATGCATCTTTTACCACAAAAATGTTCCAACATATAATTTCAAGTTGTGAAGCCACACAATTCTCCCGGCATTATATCTTATAGAATCAGATGATTGCTGCAGTGAATATAATCCAGAGTGAGATGGATGATTTATACAACGAAAACTCACTTCATTGGAAGGTTTATGCTATGGATAAATTGGGAACTTGTAACCTGGATCTGGCTACTAATTCATTATCCTCCTGGAATTTCTGCAGTGTTTATGCAAATTGATGTTCTTCTCAATATATATGAAATCAAAAATTTTCAAGAGTTGTTTGCTGTCACAACAATAACTTGGTCCATTCTGAGGCTCCTGGGATTATTTTCATAAGAATGGGCTTCCAACCAGTGCATATTAACAATTGATGACCAGGTTGGTTTGTGTCATGTGCACAATGAAGAAAGGTGTAACTATGATTCGTCCTCATCATCATGAACTGATCGAGGTCATATTTTTTATCAGAGTAATCTTTTGATTGAGAGTGCTCAGATTAAAATAAATTATACGATCTTCTGAAAAACTCAAGCCTGTGTGAAAAAGACCACCTTTATAAGTTACTCAGTTGATACTACCTTATTGCCAGGCCTATATATGCTGCACTAGCTACAATGGGCTATGCCAAATAAATTTAACTGTTGAGTAGTATATAAAGAAATCACATTGCATATTCAACACTGTGATACAATGATTTGAAACTGTATAAAAGTCACATTGCATATTCAGGTTTGAAACCGTATAAAAGTCAAGTTTCTC

Ace file of the UniGene sp_v3.0_unigene34383

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lecithine cholesterol acyltransferase-like protein [Medicago truncatula]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Phosphatidylcholine: Diacylglycerol Acyltransferase	-	-	3.506e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid:diacylglycerol acyltransferase.	EC:2.3.1.158	-	2.05e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycerolipid metabolism	00561		2.05e-12	%

Source	Gene names
Sma3	At3g44830; At5g13640; F28D10_20; GSVIVT00016485001; GSVIVT00022107001; GSVIVT00034111001; OJ1123_B08.7-1; Os09g0444200; OsI_31553; OsJ_29547; P0046G12.50-1; PHYPADRAFT_225885; POPTRDRAFT_582136; POPTRDRAFT_649061; POPTRDRAFT_751462; POPTRDRAFT_854288; POP

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	phosphatidylcholine-sterol O-acyltransferase activity	GO:0004607	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase	IPR003386	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13640.1	ATPDAT, PDAT, PDAT1 phospholipid:diacylglycerol acyltransferase chr5:4393529-4397213 FORWARD LENGTH=671	67%
RefSeq	Arabidopsis thaliana	NP_196868.1	phospholipid:diacylglycerol acyltransferase 1 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002303252.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQP7

Fln msg: your sequence is shorter than subject: 418 - 681

Fln protein: LHFMKWVETPAPMGGGGGPDWCAKYIKAVMNIGGPFLGVPKAVTGLLSAEAKDVAVARGVTPGVVDNEFFGRHTLQHLMRMTRTWDATMSMLPKGGETIWGDLDWAPEEGYQCRPKDKQQEVHDERNLSTAAISSQRERGMHTGRIISFGKDAAELPSSELVMKDYMASSKNNDLTKSNVSCGDVWTEYHEMAWESIEAVADHKVYTAETVLDLLHFVAPRLMQRGDTHFSYGIADNLDDPKYKHYKYWSNPLETKLPNAPDIEIYSMYGVGIPTERAYVYKLSPSADTCYIPFRIDTSADGGQAESCLKGGVYVTEGDETVPSLSAGFMCAKGWRGKTRFNPSGMSTYIREYLHAPPANILEGRGTQSGAHVDIMGNFALIEDIIRVAAGANGEDIGGDQVYSGILEWSEKIKLKL*

Protein Length: 419

Fln nts: TTTTACACTTTATGAAGTGGGTGGAGACACCAGCTCCTATGGGTGGTGGAGGTGGCCCAGATTGGTGTGCCAAATATATAAAAGCAGTAATGAATATTGGAGGTCCATTCCTTGGTGTCCCAAAAGCTGTCACAGGACTTCTTTCAGCTGAAGCTAAGGATGTTGCTGTTGCTAGAGGGGTTACTCCTGGTGTTGTAGACAATGAGTTTTTTGGACGTCATACTCTGCAGCATCTGATGCGCATGACTCGCACCTGGGATGCAACCATGTCAATGTTACCAAAAGGTGGTGAGACAATTTGGGGTGATCTAGACTGGGCACCAGAAGAAGGATATCAATGCCGTCCCAAGGACAAACAACAGGAGGTACATGATGAAAGGAATTTGAGTACTGCAGCAATAAGCTCTCAAAGGGAACGTGGAATGCATACTGGAAGGATTATTTCATTTGGGAAGGATGCAGCAGAACTACCTTCATCCGAGCTAGTCATGAAAGATTACATGGCCAGTTCTAAAAATAATGACCTCACTAAGTCAAATGTATCCTGTGGAGATGTCTGGACTGAGTATCATGAAATGGCTTGGGAGAGTATTGAGGCTGTTGCTGACCATAAAGTATACACAGCAGAAACTGTCTTAGATCTGCTACACTTTGTTGCCCCAAGATTAATGCAACGAGGAGATACTCATTTTTCTTATGGCATTGCTGACAATTTGGATGATCCAAAATATAAGCATTACAAGTACTGGTCTAATCCTCTTGAAACAAAATTGCCAAATGCCCCGGATATTGAGATATACTCTATGTATGGTGTTGGAATTCCTACAGAAAGAGCATATGTTTATAAATTGTCCCCTTCTGCTGACACATGCTACATACCATTTCGAATTGACACTTCAGCAGATGGGGGGCAAGCAGAGAGCTGCCTAAAAGGAGGCGTGTACGTAACTGAAGGTGATGAAACTGTGCCATCTCTCAGTGCAGGATTCATGTGTGCCAAAGGCTGGCGAGGGAAAACTAGATTTAATCCTTCAGGCATGTCAACTTATATAAGGGAGTACCTCCATGCCCCACCTGCAAACATATTAGAAGGTCGTGGTACCCAAAGTGGTGCTCATGTTGACATAATGGGAAACTTTGCTTTGATAGAGGATATCATAAGAGTAGCAGCAGGTGCAAATGGGGAAGATATAGGTGGAGATCAAGTGTATTCTGGTATTCTAGAATGGTCTGAGAAGATTAAACTAAAGCTATAA___AGTGTTCACATTATTTGTGGCATTTTCTGATGCATCTTTTACCACAAAAATGTTCCAACATATAATTTCAAGTTGTGAAGCCACACAATTCTCCCGGCATTATATCTTATAGAATCAGATGATTGCTGCAGTGAATATAATCCAGAGTGAGATGGATGATTTATACAACGAAAACTCACTTCATTGGAAGGTTTATGCTATGGATAAATTGGGAACTTGTAACCTGGATCTGGCTACTAATTCATTATCCTCCTGGAATTTCTGCAGTGTTTATGCAAATTGATGTTCTTCTCAATATATATGAAATCAAAAATTTTCAAGAGTTGTTTGCTGTCACAACAATAACTTGGTCCATTCTGAGGCTCCTGGGATTATTTTCATAAGAATGGGCTTCCAACCAGTGCATATTAACAATTGATGACCAGGTTGGTTTGTGTCATGTGCACAATGAAGAAAGGTGTAACTATGATTCGTCCTCATCATCATGAACTGATCGAGGTCATATTTTTTATCAGAGTAATCTTTTGATTGAGAGTGCTCAGATTAAAATAAATTATACGATCTTCTGAAAAACTCAAGCCTGTGTGAAAAAGACCACCTTTATAAGTTACTCAGTTGATACTACCTTATTGCCAGGCCTATATATGCTGCACTAGCTACAATGGGCTATGCCAAATAAATTTAACTGTTGAGTAGTATATAAAGAAATCACATTGCATATTCAACACTGTGATACAATGATTTGAAACTGTATAAAAGTCACATTGCATATTCAGGTTTGAAACCGTATAAAAGTCAAGTTTCTC

Fln Alignment:

Contig34383___LHFMKWVETPAPMGGGGGPDWCAKYIKAVMNIGGPFLGVPKAVTGLLSAEAKDVAVARGVTPGVVDNEFFGRHTLQHLMRMTRTWDATMSMLPKGGETIWGDLDWAPEEGYQCRPKDKQQEVHDERNLSTAAISSQRERGMHTGRIISFGKDAAELPSSELVMKDYMASSKNNDLTKSNVSCGDVWTEYHEMAWESIEAVADHKVYTAETVLDLLHFVAPRLMQRGDTHFSYGIADNLDDPKYKHYKYWSNPLETKLPNAPDIEIYSMYGVGIPTERAYVYKLSPSADTCYIPFRIDTSADGGQAESCLKGGVYVTEGDETVPSLSAGFMCAKGWRGKTRFNPSGMSTYIREYLHAPPANILEGRGTQSGAHVDIMGNFALIEDIIRVAAGANGEDIGGDQVYSGILEWSEKIKLKL
B8LQP7_______________LHFMKWVEAPAPMGGGGGPDWCAKYLKAVMNIGGPFLGVPKAVSGLFSAEAKDVAVARGVAPGVVDNEFFGRHTLQHLMRMTRTWDSTMSMLPKGGETIWGNIDWAPEEGYQCNTKDKHQEVHDERNLSTGELSSQREPGTHIGRIISFGKDAAQLPSSKLVMRDYKASSENNGLTKSNVSCGDVWTEYHEMNWESIEAVADHKVYTAETVLDLLHFVAPKLMQRGDAHFSYGIADNLDDPKYKHYKYWSNPLETKLPNAPDIEIYSMYGVGIPTERSYVYKLSPSADTCYIPFRIDTSADGGEADSCLKGGVYLTEGDETVPSLSAGFMCAKAWRGKTRFNPSGMSTYIREYLHAPPANILEGRGTQSGSHVDIMGNFALIEDVIRVAAGANGEDIGGDQVYSDVLKWSEKTKLKL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1276	16		83		0.994512
1309	12			87	0.992554
1311		87	12		0.992554
1312		87	12		0.992554
1313	87		12		0.992554
1339	85	14			0.993533
1480		85	14		0.993533
1485		14		85	0.993533
1493		85	14		0.993533
1495	85	14			0.993533
1497		14		85	0.993533
1502		14		85	0.993533
1800			40	60	1.0
1981	16			66	0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain