SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34366

Length: 2193 nt

UniGene Fasta

>sp_v3.0_unigene34366
ATGGGATCGACTCTTTAAAATTTTTCCTTAAACAACAGAGCATTTCCGATATTCGATTTTGTTTGTTAATATAGCATTAGGATGCATTTGGTTTGTATTTGATTCAGTCGTATTCTGAGGCGGGTTCGGATTGAAACATCCTTAATTTGCATGGGTCATTTGTTTTGAGGTGGGTTCTGTTGGTGACATCCTACATACCCGTGTGCAATTTGTTGTGAGGGTGTCTTTATGTTCTGTTTGTGCTGGGCTATTGACGAGGGCGAGAGGCTAAAAAGCACTCGAATGTCTGGCCGCTCCTGGCTCTGAAATATAAGAAATGTTGTAATCTGGCTGAATACTAACTATTCATCGGGTTGCATACACTTGAAGTGGACTAGAAGGCTTTACAATCGGTTCTGAAACTATGGCATTGACTTTACATGCATCGTCTATCAATAAAAATGGCTTTAAAGCACGCATCACTGCAGAATACGCTGGTGTAAAACTCAACTTAGCTCCAAATTTTGTGATGGGGGAGTCAAATAAATCCCCTGAATTTCTTAAAATGAATCCTATAGGAAAGATTCCGGTTTTGGAGACACCTGAGGGTGCAGTTTTTGAAAGTAATGTCATTGCACGTTATGTTGCACGATTGAAGGGTGACAATACCCTGTTTGGATCTTCACTGATTGATTATGCCCATGTCGAACAGTGGATAGATTTTTCTTCTATAGAGATTGATGCAAATGTCATGCGATGGTACTTTCCTAGAATTGGATCTGGACCGTACCTTCCACCGGCAGAGGAGGCTGCCATTTCTGACCTCAAGATAGGTTTACTTGCATTGAATTCATATCTGGCTACAAACACCTACCTGGTCGGGCATTCCATTACATTGGCAGACATTATTGTGACATGCAACTTGTATCAGGGTTTTACAAGATGCATGACAAAAGATTTCACTAAAGAGTTTCCTCATGTGGAGCGGTACTTTTGGACTATGGTTAATCAACCAAAATTCAAGAAGATTTTGGGTGAGGTTAAACAAGCAGATGCTGTTCCTCCTGTTCTGCAAATTAATAAGAAGGCTGCTCAAGCTAAAGAACAAAAGCATAAGCCTAAACAGGAGGTCAAAAAACAACCTGCAAAGCCTAAGGTGGAAGATCCTCCTGCAGATGAGGATGAGGCCCCCAAACCAAAGCCAAAAAATCCTCTTGATCTTCTGCCACCCAGTAAAATGGTTCTCGATGATTGGAAGAGACTTTATTCAAACACAAAGACTAATTTTCGAGAGGTTGCTATTAAAGGGTTCTGGGATATGTATGATCCAGAAGGATATTCATTGTGGTTCTGTGAGTACAAATACAATGATGAAAATACAGTTTCATTTGTCACATTGAACAAAGTCACAGGATTCTTGCAACGTATGGATCTTGCACGCAAGTATGCTTTTGGAAAGATGCTTATCATTGGAAAAGAGGGCCCTTTTAAAGTCAAGGGATTATGGCTTTTCCGTGGGCCAGAAATTCCCAAGTTTGTTATGGATGAATGCTATGATATGGAATTGTACAAATGGACTAAGGTAGACATCAATGATGACGCTCAGAGAGAGCGTGCAAATGCCATGATTGAAGATCAAGAGCCCTTTGAGGGTGAGCCTTTGTTGGATGCCAAATGTTTCAAGTGATATATTCCCTTGCATGTCAGTTTTGAAGATTTGGTCTTGTTTAGAACTATATTGTTTTGTCTTCATGTTTCATCCACAATTTATGCGGAGAAGCTTTTTATGCAACTGCTTGAGTTCAAGCTACCTTTCAGAGATTGAGTCATTGTATGAGGAATTTTCTGGAATAATTGGATTCATTTAAAAAAATCGATGTTTTGGACTAAACTATTGTGGTTATTTCAGGATTAAATTTGTGTCATATTTCTTCTTGGCGAGAAACACCATATCTTGCTACAGTTGGCATCTTTGCCTTGATTAATTTTGCTGTAAATTGAACACAATTACTTCTGCATTTTCGATGGTTTAGCAATGAGGGTTTGATGTCAGCGTTGATGTAAGGTTATCTGGTATGTATACAATAAGGTCACTTGGGGCGTTTTTAATTGCTTTTTGACATTGCATCCATTCGACATGCTATTTTATGTTTTGTTAGAATACGAGGCTTTTCATTAGAGCTTCTACCTAAGAAATCGTCATATTTGGGTTTT

Ace file of the UniGene sp_v3.0_unigene34366

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-gamma n=1 Tax=Prunus avium RepID=EF1G_PRUAV	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	eukaryotic translation elongation factor 1 complex	GO:0005853	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3		IPR012335	-	-
Sma3	Translation elongation factor EF1B, gamma chain, conserved	IPR001662	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G57720.1	Translation elongation factor EF1B, gamma chain chr1:21377873-21380114 FORWARD LENGTH=413	71%
RefSeq	Arabidopsis thaliana	NP_001031202.1	elongation factor EF-1 gamma subunit [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002325529.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWP6

Fln msg:

Fln protein: MALTLHASSINKNGFKARITAEYAGVKLNLAPNFVMGESNKSPEFLKMNPIGKIPVLETPEGAVFESNVIARYVARLKGDNTLFGSSLIDYAHVEQWIDFSSIEIDANVMRWYFPRIGSGPYLPPAEEAAISDLKIGLLALNSYLATNTYLVGHSITLADIIVTCNLYQGFTRCMTKDFTKEFPHVERYFWTMVNQPKFKKILGEVKQADAVPPVLQINKKAAQAKEQKHKPKQEVKKQPAKPKVEDPPADEDEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVTGFLQRMDLARKYAFGKMLIIGKEGPFKVKGLWLFRGPEIPKFVMDECYDMELYKWTKVDINDDAQRERANAMIEDQEPFEGEPLLDAKCFK*

Protein Length: 422

Fln nts: ATGGGATCGACTCTTTAAAATTTTTCCTTAAACAACAGAGCATTTCCGATATTCGATTTTGTTTGTTAATATAGCATTAGGATGCATTTGGTTTGTATTTGATTCAGTCGTATTCTGAGGCGGGTTCGGATTGAAACATCCTTAATTTGCATGGGTCATTTGTTTTGAGGTGGGTTCTGTTGGTGACATCCTACATACCCGTGTGCAATTTGTTGTGAGGGTGTCTTTATGTTCTGTTTGTGCTGGGCTATTGACGAGGGCGAGAGGCTAAAAAGCACTCGAATGTCTGGCCGCTCCTGGCTCTGAAATATAAGAAATGTTGTAATCTGGCTGAATACTAACTATTCATCGGGTTGCATACACTTGAAGTGGACTAGAAGGCTTTACAATCGGTTCTGAAACT_-_ATGGCATTGACTTTACATGCATCGTCTATCAATAAAAATGGCTTTAAAGCACGCATCACTGCAGAATACGCTGGTGTAAAACTCAACTTAGCTCCAAATTTTGTGATGGGGGAGTCAAATAAATCCCCTGAATTTCTTAAAATGAATCCTATAGGAAAGATTCCGGTTTTGGAGACACCTGAGGGTGCAGTTTTTGAAAGTAATGTCATTGCACGTTATGTTGCACGATTGAAGGGTGACAATACCCTGTTTGGATCTTCACTGATTGATTATGCCCATGTCGAACAGTGGATAGATTTTTCTTCTATAGAGATTGATGCAAATGTCATGCGATGGTACTTTCCTAGAATTGGATCTGGACCGTACCTTCCACCGGCAGAGGAGGCTGCCATTTCTGACCTCAAGATAGGTTTACTTGCATTGAATTCATATCTGGCTACAAACACCTACCTGGTCGGGCATTCCATTACATTGGCAGACATTATTGTGACATGCAACTTGTATCAGGGTTTTACAAGATGCATGACAAAAGATTTCACTAAAGAGTTTCCTCATGTGGAGCGGTACTTTTGGACTATGGTTAATCAACCAAAATTCAAGAAGATTTTGGGTGAGGTTAAACAAGCAGATGCTGTTCCTCCTGTTCTGCAAATTAATAAGAAGGCTGCTCAAGCTAAAGAACAAAAGCATAAGCCTAAACAGGAGGTCAAAAAACAACCTGCAAAGCCTAAGGTGGAAGATCCTCCTGCAGATGAGGATGAGGCCCCCAAACCAAAGCCAAAAAATCCTCTTGATCTTCTGCCACCCAGTAAAATGGTTCTCGATGATTGGAAGAGACTTTATTCAAACACAAAGACTAATTTTCGAGAGGTTGCTATTAAAGGGTTCTGGGATATGTATGATCCAGAAGGATATTCATTGTGGTTCTGTGAGTACAAATACAATGATGAAAATACAGTTTCATTTGTCACATTGAACAAAGTCACAGGATTCTTGCAACGTATGGATCTTGCACGCAAGTATGCTTTTGGAAAGATGCTTATCATTGGAAAAGAGGGCCCTTTTAAAGTCAAGGGATTATGGCTTTTCCGTGGGCCAGAAATTCCCAAGTTTGTTATGGATGAATGCTATGATATGGAATTGTACAAATGGACTAAGGTAGACATCAATGATGACGCTCAGAGAGAGCGTGCAAATGCCATGATTGAAGATCAAGAGCCCTTTGAGGGTGAGCCTTTGTTGGATGCCAAATGTTTCAAGTGA___TATATTCCCTTGCATGTCAGTTTTGAAGATTTGGTCTTGTTTAGAACTATATTGTTTTGTCTTCATGTTTCATCCACAATTTATGCGGAGAAGCTTTTTATGCAACTGCTTGAGTTCAAGCTACCTTTCAGAGATTGAGTCATTGTATGAGGAATTTTCTGGAATAATTGGATTCATTTAAAAAAATCGATGTTTTGGACTAAACTATTGTGGTTATTTCAGGATTAAATTTGTGTCATATTTCTTCTTGGCGAGAAACACCATATCTTGCTACAGTTGGCATCTTTGCCTTGATTAATTTTGCTGTAAATTGAACACAATTACTTCTGCATTTTCGATGGTTTAGCAATGAGGGTTTGATGTCAGCGTTGATGTAAGGTTATCTGGTATGTATACAATAAGGTCACTTGGGGCGTTTTTAATTGCTTTTTGACATTGCATCCATTCGACATGCTATTTTATGTTTTGTTAGAATACGAGGCTTTTCATTAGAGCTTCTACCTAAGAAATCGTCATATTTGGGTTTT

Fln Alignment:

Contig34366___MALTLHASSINKNGFKARITAEYAGVKLNLAPNFVMGESNKSPEFLKMNPIGKIPVLETPEGAVFESNVIARYVARLKGDNTLFGSSLIDYAHVEQWIDFSSIEIDANVMRWYFPRIGSGPYLPPAEEAAISDLKIGLLALNSYLATNTYLVGHSITLADIIVTCNLYQGFTRCMTKDFTKEFPHVERYFWTMVNQPKFKKILGEVKQADAVPPVLQIN-XXXXXXXXXXXXXXXEVKKQPA---XXXXXXXXXXXXXXXXXXXXXXXXXXXXSKMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVTGFLQRMDLARKYAFGKMLIIGKEGPFKVKGLWLFRGPEIPKFVMDECYDMELYKWTKVDINDDAQRERANAMIEDQEPFEGEPLLDAKCFK
A9NWP6_______________MALTLHAGHTNKNAFKALIAAEYVGVKINLAPNFEMGVTNKSQKFLSMNPIGKVPVLETPEGAVFESNAIARYVARLKDDNSLFGSSLIDYGHVEQWIDFSSLEIDINIMRWYFPRMGHGLYLPPAEEATIAGLKRGLAALNSHLATNTYLVGHSITLADIIMTCNLYLGFSRCMTKDFTKEFPHVERYFWTMVNQPKVKKILGEVKQADAVPAVVHPNKKAAAPAKEQKQKPKQEVKIKEAAKPKVEDPPAADEEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVTGFLQRMDLARKYAFGKMLIIGKEGPFKVKGLWLFRGPEIPKFFVDECYDMELYEWTKVDLNDEAQKELVNAMIEDQEPFEGEPLLDAKCFK

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
93	28			71	1.0
96			14	71	0.984337
97	71		28		1.0
98			28	71	1.0
99			28	71	1.0
184	11			88	0.923564
225	11	88			0.923564
227			11	88	0.923564
228			11	88	0.923564
602	83		16		0.994512
1121		75	25		1.0
1136	14		85		0.993533
1192	11			88	0.923564
1605	2	97			0.969538
1733		95	1	3	0.911382
1764		2		90	0.999997
1841	15		85		1.0
1870		11		88	0.999937
2057	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain