SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34294

Length: 2567 nt

UniGene Fasta

>sp_v3.0_unigene34294
ATGGGGAGGGTTCAAATGAAATTATCCGCGAGATAAGGGCGCAGAGCTTGGTCACACCTATGGCCGCTCGCTTGACAGAGGGCGCTTGGAATTTGCCTACAAATATCTGGCGAAAAGATATCGCCTCGAAAGGTGCAACTGAACAGCCGACCAGGAGAGTAAATGCATAAACTCGCGTTCCCCGTAACGCTATCAGTTTATCGCCGAGCAGATCAAACCCGTGTTCGGCCATTCAATCAACCTTCCTGGCACCCTGGACGACGGCTCTTAGGGTGCCATGACGGAATTTCATGGATTGTGAAGGGAACCGGCTTTGCAGCTCATTTTCCGCTGTAAAATTAATTGTATTGAATTTCAGGAACTGACGTTCCAGGGATTGAAAAAGATGATTCAAATTGCTCCAATTGCCCCGATTGGGGTTTCGATCCCTTTTCAGAACCGCAACAAATTGCAGCCGTGGCGGACAAGGAAAAATGGCGACAATCTGGCGGTATTTGTGTCGAAGAAGCCAGGGCGTTTCGGCAATTGCCGCTGCCAGAAGACCGACCGACTGAACGACATTATCGGCAAGGAAATTAACGGACCCGTCGATATGGTGGCGGCTGAAATGAACGCTAATAATGTGTTAGTTGATAGAATTGTAGCCGACCAGGCGGAGAGAAAACCGAGAGCAGGGACAAATGAGAAGGAGAATCATATCGAGAAGGAAGCGTGGAACCTTCTCAGGTCTGCTGTTGTAGACTACTGCGGGAGCCCGATCGGAACTATTGCTGCAAATGATCCCACTGATCCCAGCATGCTTAATTATGATCAGGTTTTCATTCGCGATTTTATACCTTCTGGAGTGGCGTTTTTGCTCAAAGGAGAGCATGACATCGTCAGGAATTTTATTCTCCATACTCTGCAGTTGCAGAGTTGGGAGAAAACAATGGACTGTCATAGCCCTGGACAAGGTTTGATGCCAGCAAGCTTCAAAGTGCGGACAGTTCCCCGTGATGGGGATGATGATGCCACTGAAGATATACTGGACCCCGACTTCGGAGAGGCAGCAATAGGCCGCGTGGCCCCTGTTGACTCTGGATTATGGTGGATTATTCTTCTTAGAGCATATGGCAAGTTTACAGGAGATCTTTCTGTTCAGGAGAGGACTGATGTTCAAACAGGGATTAAAATGATTTTGAAGTTGTGTCTTGCTGATGGGTTTGATATGTTCCCCACATTATTAGTAACCGATGGATCATGCATGATTGATCGTCGTATGGGAATCCATGGCCATCCCCTGGAAATACAAGCACTATTTTATTCAGCTTTGCGATGTGCGCGTGAGATGCTAACTCCGGAAGATGGATCTGCAGACCTCATACGAGCATTGAATAACCGGCTGATCGCTTTGTCTTTCCACATCAGAGAATACTACTGGGTTGACATGAAAAAATTAAATGAGATTTATCGGTACAAAACTGAAGAGTACTCATATGATGCAGTAAACAAATTCAACATCTATCCAGATCAAATCTCCACATGGCTGGTAGAATGGATGCCTGACCGGGGAGGCTATTTTATTGGCAATTTACAGCCTGCTCATATGGACTTCCGCTTCTTTTCACTTGGCAACTTGTGGTCTATAGTTTGCAATCTTGCCACTGCAGAACAGTCAGATGCTGTATTGGATCTTATCGGAGAAAAGTGGAATGATTTAGTTGCAGACATGCCCTTAAAAATATGTTATCCAGCTCTTGAAGGCCAAGAATGGCAGATCATCACAGGCAGTGACCCCAAGAACACGCCCTGGTCATACCATAATGGAGGATCTTGGCCCACTTTGTTGTGGCAGCTTACAGTAGCTTGCATAAAAATGAATCGACCAGAATTAGCAAGGAAAGCAGTGGCAGTTGCTGAGAAACGACTATCAAGGGATGGGTGGCCAGAATATTATGATACGAAAAGAGCACGCTTCATAGGCAAGCAAGCACGGCTGTATCAAACATGGTCAATTGCTGGGTATCTTGTGTCCAAGCTTCTCCTCAGAAATCCTGAATTTGCCAAGATTTTGACATGTGAAGAAGATATGGAACTACTCGATGCCTGTTATTGTCTGCTCGAAGCCAATCCCAAAAGAAAGCGGGCACGCAAAAAGCCTTCCAAAAGTTATATTGTCTAATTACCAGTTTGTTTGCTTCTATAAAACAGGCATTGAATTTTTTTACCTAGTTATGCGTCACACAAATCTAAGTGACATGTAACTTGGGAATATTTGCACAGAAACGACTACCAACCACATCTCTTTCAATTCTTTTCCTCGGAAAGTAGAGACACGTTCAACAATGTTGTCATATTAATACCAATTCTTCTAACCAAACATGCAGATTAAGTAAAAATGGTGTAATTATTGGTGTGTTGAGGTGATCACTAACCAAGGAGGTTGATAAACACACAGCCCTCTATCCCGTTACTGCATGTGATATGTGAACTTCGTGTTGAAGCATTGAAGGAAGGTTATTTGAAGCTTATTTTGCAGTGTATAATTTGAACGCCTTAAGTCTTTGGAAGTCTGGAAGCTTGACATT

Ace file of the UniGene sp_v3.0_unigene34294

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alkaline/neutral invertase [Lolium temulentum]	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	76%
Sma3	Beta-fructofuranosidase, putative	-	-	6.214e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-fructofuranosidase.	EC:3.2.1.26	-	7.693e-25	-

Source	KEGGs	Term	e value	Identity
Sma3	Galactose metabolism	00052	7.693e-25	%
Sma3	Starch and sucrose metabolism	00500	7.693e-25	%
Sma3	Metabolic pathways	01100	7.693e-25	%

Source	Gene names
Sma3	AInv; AT3G06500; AT4G34860; AT4g09510; AT4g34860; AlkIN1; At1g35580; At1g56560; At1g72000; At3g05820; At3g06500; At4g09510; At4g34860; At5g22510; B1140D12.1-1; B1140D12.1-2; F10A16.11; F17M19.15; F25P12.99; F28P5.11; F5E6.17; GSVIVT00008639001; GSVIVT0001

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	beta-fructofuranosidase activity	GO:0004564	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR006937	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22510.1	INV-E, At-A/N-InvE alkaline/neutral invertase chr5:7474974-7477479 REVERSE LENGTH=617	77%
RefSeq	Arabidopsis thaliana	NP_197643.1	alkaline/neutral invertase [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002311958.1	predicted protein, partial [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6I5X0

Fln msg:

Fln protein: MIQIAPIAPIGVSIPFQNRNKLQPWRTRKNGDNLAVFVSKKPGRFGNCRCQKTDRLNDIIGKEINGPVDMVAAEMNANNVLVDRIVADQAERKPRAGTNEKENHIEKEAWNLLRSAVVDYCGSPIGTIAANDPTDPSMLNYDQVFIRDFIPSGVAFLLKGEHDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPRDGDDDATEDILDPDFGEAAIGRVAPVDSGLWWIILLRAYGKFTGDLSVQERTDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCAREMLTPEDGSADLIRALNNRLIALSFHIREYYWVDMKKLNEIYRYKTEEYSYDAVNKFNIYPDQISTWLVEWMPDRGGYFIGNLQPAHMDFRFFSLGNLWSIVCNLATAEQSDAVLDLIGEKWNDLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNGGSWPTLLWQLTVACIKMNRPELARKAVAVAEKRLSRDGWPEYYDTKRARFIGKQARLYQTWSIAGYLVSKLLLRNPEFAKILTCEEDMELLDACYCLLEANPKRKRARKKPSKSYIV*

Protein Length: 593

Fln nts: ATGGGGAGGGTTCAAATGAAATTATCCGCGAGATAAGGGCGCAGAGCTTGGTCACACCTATGGCCGCTCGCTTGACAGAGGGCGCTTGGAATTTGCCTACAAATATCTGGCGAAAAGATATCGCCTCGAAAGGTGCAACTGAACAGCCGACCAGGAGAGTAAATGCATAAACTCGCGTTCCCCGTAACGCTATCAGTTTATCGCCGAGCAGATCAAACCCGTGTTCGGCCATTCAATCAACCTTCCTGGCACCCTGGACGACGGCTCTTAGGGTGCCATGACGGAATTTCATGGATTGTGAAGGGAACCGGCTTTGCAGCTCATTTTCCGCTGTAAAATTAATTGTATTGAATTTCAGGAACTGACGTTCCAGGGATTGAAAAAG_-_ATGATTCAAATTGCTCCAATTGCCCCGATTGGGGTTTCGATCCCTTTTCAGAACCGCAACAAATTGCAGCCGTGGCGGACAAGGAAAAATGGCGACAATCTGGCGGTATTTGTGTCGAAGAAGCCAGGGCGTTTCGGCAATTGCCGCTGCCAGAAGACCGACCGACTGAACGACATTATCGGCAAGGAAATTAACGGACCCGTCGATATGGTGGCGGCTGAAATGAACGCTAATAATGTGTTAGTTGATAGAATTGTAGCCGACCAGGCGGAGAGAAAACCGAGAGCAGGGACAAATGAGAAGGAGAATCATATCGAGAAGGAAGCGTGGAACCTTCTCAGGTCTGCTGTTGTAGACTACTGCGGGAGCCCGATCGGAACTATTGCTGCAAATGATCCCACTGATCCCAGCATGCTTAATTATGATCAGGTTTTCATTCGCGATTTTATACCTTCTGGAGTGGCGTTTTTGCTCAAAGGAGAGCATGACATCGTCAGGAATTTTATTCTCCATACTCTGCAGTTGCAGAGTTGGGAGAAAACAATGGACTGTCATAGCCCTGGACAAGGTTTGATGCCAGCAAGCTTCAAAGTGCGGACAGTTCCCCGTGATGGGGATGATGATGCCACTGAAGATATACTGGACCCCGACTTCGGAGAGGCAGCAATAGGCCGCGTGGCCCCTGTTGACTCTGGATTATGGTGGATTATTCTTCTTAGAGCATATGGCAAGTTTACAGGAGATCTTTCTGTTCAGGAGAGGACTGATGTTCAAACAGGGATTAAAATGATTTTGAAGTTGTGTCTTGCTGATGGGTTTGATATGTTCCCCACATTATTAGTAACCGATGGATCATGCATGATTGATCGTCGTATGGGAATCCATGGCCATCCCCTGGAAATACAAGCACTATTTTATTCAGCTTTGCGATGTGCGCGTGAGATGCTAACTCCGGAAGATGGATCTGCAGACCTCATACGAGCATTGAATAACCGGCTGATCGCTTTGTCTTTCCACATCAGAGAATACTACTGGGTTGACATGAAAAAATTAAATGAGATTTATCGGTACAAAACTGAAGAGTACTCATATGATGCAGTAAACAAATTCAACATCTATCCAGATCAAATCTCCACATGGCTGGTAGAATGGATGCCTGACCGGGGAGGCTATTTTATTGGCAATTTACAGCCTGCTCATATGGACTTCCGCTTCTTTTCACTTGGCAACTTGTGGTCTATAGTTTGCAATCTTGCCACTGCAGAACAGTCAGATGCTGTATTGGATCTTATCGGAGAAAAGTGGAATGATTTAGTTGCAGACATGCCCTTAAAAATATGTTATCCAGCTCTTGAAGGCCAAGAATGGCAGATCATCACAGGCAGTGACCCCAAGAACACGCCCTGGTCATACCATAATGGAGGATCTTGGCCCACTTTGTTGTGGCAGCTTACAGTAGCTTGCATAAAAATGAATCGACCAGAATTAGCAAGGAAAGCAGTGGCAGTTGCTGAGAAACGACTATCAAGGGATGGGTGGCCAGAATATTATGATACGAAAAGAGCACGCTTCATAGGCAAGCAAGCACGGCTGTATCAAACATGGTCAATTGCTGGGTATCTTGTGTCCAAGCTTCTCCTCAGAAATCCTGAATTTGCCAAGATTTTGACATGTGAAGAAGATATGGAACTACTCGATGCCTGTTATTGTCTGCTCGAAGCCAATCCCAAAAGAAAGCGGGCACGCAAAAAGCCTTCCAAAAGTTATATTGTCTAA___TTACCAGTTTGTTTGCTTCTATAAAACAGGCATTGAATTTTTTTACCTAGTTATGCGTCACACAAATCTAAGTGACATGTAACTTGGGAATATTTGCACAGAAACGACTACCAACCACATCTCTTTCAATTCTTTTCCTCGGAAAGTAGAGACACGTTCAACAATGTTGTCATATTAATACCAATTCTTCTAACCAAACATGCAGATTAAGTAAAAATGGTGTAATTATTGGTGTGTTGAGGTGATCACTAACCAAGGAGGTTGATAAACACACAGCCCTCTATCCCGTTACTGCATGTGATATGTGAACTTCGTGTTGAAGCATTGAAGGAAGGTTATTTGAAGCTTATTTTGCAGTGTATAATTTGAACGCCTTAAGTCTTTGGAAGTCTGGAAGCTTGACATT

Fln Alignment:

Contig34294___NCRCQKTDRLNDIIGKEINGP--VDMVAAEMNANNVLVDRIVA---DQAERKPRA------GTNE---------KENHIEKEAWNLLRSAVVDYCGSPIGTIAANDPTDPSMLNYDQVFIRDFIPSGVAFLLKGEHDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPRDGDDDATEDILDPDFGEAAIGRVAPVDSGLWWIILLRAYGKFTGDLSVQERTDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCAREMLTPEDGSADLIRALNNRLIALSFHIREYYWVDMKKLNEIYRYKTEEYSYDAVNKFNIYPDQISTWLVEWMPDRGGYFIGNLQPAHMDFRFFSLGNLWSIVCNLATAEQSDAVLDLIGEKWNDLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNGGSWPTLLWQLTVACIKMNRPELARKAVAVAEKRLSRDGWPEYYDTKRARFIGKQARLYQTWSIAGYLVSKLLLRNPEFAKILTCEEDMELLDACYCLLEAN
F6I5X0_______________SCKCQRADSVSGIASEAGNGTWFVDNAKKRNPINGVMDTPNVLEFQDVQELKPEMEGSISNGAVETARDTFVKVRVDSIEDEAWDLLRESMVYYCGSPIGTIAAKDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERIDVQTGIKMILRLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDMKKLNEIYRYKTEEYSYDAVNKFNIYPDQISPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNLWSIISSLATMDQSHAILDLVEAKWGDLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQLTVACIKMDRPQIAAKAVEIAERRIARDKWPEYYDTKKARFIGKQACLFQTWSIAGYLVAKLLLSDPTAAKILITEEDSELVNAFSCMISAN

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
223		20		80	0.995493
820	16			83	0.994512
1061		66		33	0.997452
1166		12	87		0.992554
1231	20	80			0.995493
1236			80	20	0.995493
1316	33		66		0.997452
1387		33		66	0.997452
1523	87	12			0.992554
1524			12	87	0.992554
1526			87	12	0.992554
1528	12			87	0.992554
1631		15		84	0.999986
2190	90	10			0.90298
2377	88	11			0.923564
2379	88			11	0.923564
2508		62	37		1.0
2539	66			33	0.997452
2544		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain