SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34227

Length: 836 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34227

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=DEAD-box ATP-dependent RNA helicase 45	-	-	0.0	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Dead box ATP-dependent RNA helicase, putative	-	-	6.13e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	4.76e-23	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	4.76e-23	%
Sma3	Lipopolysaccharide biosynthesis	00540	4.76e-23	%
Sma3	Folate biosynthesis	00790	4.76e-23	%
Sma3	Metabolic pathways	01100	4.76e-23	%

Source	Gene names
Sma3	At1g20920; At1g55150; At2g47330; At3g06480; At3g09620; At5g51280; At5g63120; CHLREDRAFT_118630; CHLREDRAFT_129561; CHLREDRAFT_131102; CHLREDRAFT_136376; CHLREDRAFT_136620; CHLREDRAFT_176229; DBP2; DRH1; ER68; F11F8_21; F24P17.2; F9H16.10; GSVIVT0000371600

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO:0000184	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:2949152-2952205 REVERSE LENGTH=989	83%
RefSeq	Arabidopsis thaliana	NP_001077571.1	DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002307002.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Distance to subject end: 167 aas, your sequence is shorter than subject: 278 - 593

Fln protein: LYRKQLELKIRGKDIPKPVKTWNQTGLTRNVLEVIKKLGFEKPMSIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPLDTGDGPIGLIMAPTRELVQQIHADIKKIAKVLGLNCVPVYGGSGVAQQISDLKRGTEIVVCTPGRMIDILCTSAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTRPVEIQVGGRSVVNKDIAQSVEIRPEGERFLRLLEILGEWYEKGKILVFVHSQE

Protein Length: 279

Fln nts: ACTTTACAGGAAGCAGCTTGAGTTGAAGATTCGTGGAAAAGATATACCGAAACCTGTGAAGACATGGAACCAGACTGGATTGACTCGTAATGTCCTTGAAGTCATAAAAAAATTAGGATTTGAGAAACCTATGTCTATTCAAGCCCAGGCCCTTCCTGTTATCATGAGCGGGAGAGATTGTATCGGTGTAGCGAAAACAGGTTCAGGTAAGACTCTTGCATTTGTTTTGCCTATGCTAAGGCATATCAAAGATCAGCCTCCTCTTGATACAGGTGATGGACCAATTGGTCTCATTATGGCTCCCACAAGAGAGCTTGTTCAACAGATTCACGCTGATATCAAAAAAATTGCTAAGGTATTAGGATTAAATTGTGTGCCTGTCTATGGAGGTTCTGGAGTAGCGCAACAAATTAGTGATTTGAAGAGAGGTACAGAAATTGTGGTATGCACACCTGGTAGAATGATCGATATCTTATGTACAAGTGCTGGTAAGATAACGAATCTTCGTAGAGTCACTTACCTTGTCATGGATGAAGCTGATAGGATGTTCGATATGGGCTTTGAGCCTCAAATTACTAGAATAGTTCAAAATACTAGACCAGACAGACAAACTGTGCTCTTCTCTGCTACATTCCCTAGGCAGGTAGAGATTCTTGCTCGCAAAGTATTGACTAGGCCAGTGGAGATTCAAGTTGGTGGACGCAGTGTTGTAAACAAGGATATAGCACAGTCTGTAGAGATTCGCCCTGAAGGCGAGAGGTTCTTGAGGCTCTTGGAGATCCTCGGTGAGTGGTATGAAAAGGGCAAAATTTTAGTCTTTGTACATTCACAGGAGA

Fln Alignment:

Contig34227___YRKQLELKIRGKDIPKPVKTWNQTGLTRNVLEVIKKLGFEKPMSIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPLDTGDGPIGLIMAPTRELVQQIHADIKKIAKVLGLNCVPVYGGSGVAQQISDLKRGTEIVVCTPGRMIDILCTSAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTRPVEIQVGGRSV-VNKDIAQSVEIRPEGERFLRLLEILGEWYEKGKILVFVHSQE
C0PQ26_______________YRKRREITVEGRDVPKPLRSFREASFTDHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQPHLAHGDGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML---EARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIRPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLLEEIMDGSRILIFMETKK

SNPs (tot: 5)

Position	A %	G %	T %	Probability
543		75	25	0.996473
545	75	25		0.996473
546		25	75	0.996473
721		80	20	0.995493
722		80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain