SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34222

Length: 1517 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene34222

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gb\|AAG40052.1\|AF324701_1 At2g21280 [Arabidopsis thaliana] gb\|AAG41477.1\|AF326895_1 unknown protein [Arabidopsis thaliana] gb\|AAK00395.1\|AF339713_1 unknown protein [Arabidopsis t	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF1731, C-terminal	IPR013549	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Sugar nucleotide epimerase YfcH, putative	IPR010099	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G21280.1	GC1, ATSULA, SULA NAD(P)-binding Rossmann-fold superfamily protein chr2:9110502-9112679 REVERSE LENGTH=347	71%
RefSeq	Arabidopsis thaliana	NP_565505.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002313756.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRG9

Fln msg:

Fln protein: MSISTTICRSFPSRTNGRHTPIATTFTCHLQYKLHHPARASTATQGPVKTDEMTVSITGATGFIGRKLVQRLVADNHKIRVLTRSMSKAKRIFPANDYPGIIIVEEPEWTKYIHGSTAVVNLAGTPISTRWSPEIKKDIKNSRVSVTSKVVEAINAATIENRPSVFVSATAVGYYGTSEGETFDETSSSGNDYLSEVCREWEAIAQKVDDTVRLVLLRNGIVLDKDGGALAKMIPLFMMFAGGPIGSGKQWFSWIHRDDLVSLIIEALSNPAYKGVINGTAPNPVRLAEMCDRLGSVMGRPSWLPVPEFAVKAIFGEGASVVLDGQRAVPRRAQELGFKYKYPHVSDAIRAIMSS*

Protein Length: 357

Fln nts: TAAATCAAATTTTAAACCAATGGAGCATGAAGCGGATGATAAGGGTGTTGTGTTGCTGTCATAAGGCCGTTCGCACATGACACTCTCCGTCCCAGTCTTAGCAACCTCAACTTCAATTTTGTTTCCTCACATTCTCCGTTGAAGAAGCTCAATCCA_-_ATGTCAATCTCTACTACAATTTGCAGGTCGTTTCCCTCAAGGACTAATGGACGCCACACTCCCATTGCAACCACCTTTACTTGCCATTTGCAGTACAAGTTGCACCATCCTGCAAGGGCATCAACTGCTACTCAAGGGCCCGTTAAGACCGATGAAATGACAGTATCAATAACAGGAGCAACAGGGTTTATTGGGAGAAAACTAGTCCAACGGCTTGTTGCAGATAATCATAAGATTCGAGTTCTCACTCGATCCATGTCCAAAGCAAAACGCATATTTCCGGCAAATGACTACCCTGGTATTATAATTGTTGAGGAACCAGAGTGGACGAAATATATCCATGGTTCAACTGCAGTTGTCAACTTGGCGGGAACACCTATTAGTACTAGATGGTCCCCTGAGATCAAGAAAGACATTAAGAATAGTAGGGTTTCAGTCACTTCAAAGGTTGTTGAAGCAATTAATGCTGCAACTATTGAAAACAGACCATCAGTTTTTGTAAGTGCAACGGCAGTTGGTTACTATGGAACAAGTGAGGGAGAAACTTTTGATGAGACAAGTTCTTCAGGAAATGATTATTTATCAGAGGTTTGCAGAGAGTGGGAGGCGATAGCACAGAAGGTGGATGACACGGTCAGATTAGTTCTTCTCCGTAACGGCATAGTTCTTGACAAAGATGGTGGTGCTTTAGCCAAAATGATCCCACTTTTTATGATGTTTGCTGGAGGTCCTATTGGATCAGGAAAACAATGGTTTTCTTGGATTCATCGTGATGATTTGGTGAGCCTTATAATTGAAGCACTTTCAAACCCAGCTTATAAAGGTGTGATCAATGGTACGGCACCAAATCCAGTACGCTTAGCTGAAATGTGTGATCGTCTGGGAAGTGTTATGGGACGGCCATCATGGCTCCCTGTACCTGAATTTGCAGTAAAGGCAATTTTTGGGGAAGGTGCTTCTGTTGTCTTGGATGGACAGAGAGCGGTTCCCAGAAGAGCTCAGGAATTAGGTTTCAAATATAAATACCCCCATGTAAGCGATGCAATCAGGGCAATTATGTCCTCCTAG___TCTAATCTGTCTGCATCGTGTCATTCTTTCCCACCAACGAATGGAAACAGTTTGTTACGCTAATGACCTTTTTGTTTTCACTCCACTAATCAGCAATATGCTTATCTAGCTTCCAGCCAATCGGATAAATTTAATTTTTCATTGCTTTTAATTATTAGAATAACTGGTCTGCAAGATACTATTAGCCAGGTTTTTTATTCATATTGGTCAATTGATTTAGAAAAAAAATTGAAGTGCCACTAATAAAAGGCTCATTTTGTACATGAAAAGATTAGAATAATCATTTTTGGCCT

Fln Alignment:

Contig34222___MSISTT-ICRSFPSRTNGRHTPIATTFTCHLQYKLHHPARASTATQGPVKTDEMTVSITGATGFIGRKLVQRLVADNHKIRVLTRSMSKAKRIFPANDYPGIIIVEEPEWTKYIHGSTAVVNLAGTPISTRWSPEIKKDIKNSRVSVTSKVVEAINAATIENRPSVFVSATAVGYYGTSEGETFDETSSSGNDYLSEVCREWEAIAQKVDDTVRLVLLRNGIVLDKDGGALAKMIPLFMMFAGGPIGSGKQWFSWIHRDDLVSLIIEALSNPAYKGVINGTAPNPVRLAEMCDRLGSVMGRPSWLPVPEFAVKAIFGEGASVVLDGQRAVPRRAQELGFKYKYPHVSDAIRAIM
A9NRG9_______________MSTSTTPICRPFSPRSNGRHMPIATTFTCYLQYKLQQPARASTTTQRPAKTDEMTISITGATGFIGRKLVQRLVADNHKIRVLTRSMSKAKRIFPANDYPGIIIVEEPEWTKYIQGSTAVVNLAGTPISTRWSPEIKTDIKNSRVSVTSKVVEAINAATIENRPSVFVSATAIGYYGTSEGETFDETSSSGNDYLSEVCREWEANAQKVDDTVRLVLLRIGIVLDKDGGALAKMIPLFMLFAGGPIGSGKQWFSWIHRDDLVSLILEALSNPAYKGVINGTAPNPVRLAEMCDRLGSVMGRPSWLPVPEFAVKAIFGEGASVVLDGQKVFPKRAQELGFKYKYPHVSDAIRAII

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
273	75		25		0.996473
734	10			90	0.90298
735		11		88	0.923564
751	12		87		0.992554
754			87	12	0.992554
755	87			12	0.992554
815		75		25	1.0
979	88	11			0.923564
981		11	88		0.923564
982	11		88		0.923564
1058	28		71		1.0
1124	12	87			0.992554
1125	12			87	0.992554
1128			87	12	0.992554
1395		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain