SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34214

Length: 2156 nt

UniGene Fasta

>sp_v3.0_unigene34214
AACTTCTGATGAACACAGTGAGTCTAAAGGTATCGGCATCATTGCGCGACACAGAAAACTAGAAGAACTGGCACATATGGAGTGCAGGCGGACACAGGCTCGGATTCATCCAAACATCCTGAAAGTGTTGGCCATGTAACTCATAGAAATGTGGTCCAAAGAAGCAGACAAGGGAACCAGAAGGCACAACGCACACTATTTGTATCTTGCATTCCTCCCCAAAACAACAAAGCAGAATTGCTGCTATCTCATTTTAAGAAATTTGGGGAGGTTCTTGGTATTTATATTCCACCAAACACTGACAGGGCTTTTGTGCAATATTCTAGTCGAAAAGAAGCTGAGGGGGCTCTCACTTCAACAGATGCTGTCATGGGGAACCGGTTCATCAAATTGGCATGGGCCAGGTGGGATAGCACAATGGAACTAGAGAAGACTAATACAACCTTAGCATCTCCTGGGAAGACTTCCAATGCAATGGCTGTTGCCATTCCAGTCTCGCCAATGCTGAAGCAAAGCATTAGTAACTCTGTTCTGCCATTCAGTCCTCGAAATTCAACATCTGAAGCAATTAACGCTGATACCCGTTCTGTTAAACTTATGCCAACAAATGAGTCAAGATCTTCAACAATTTCTACTGTTAATAAGCAGGAAACTCTAGAGTCTCTGAAGCTGCTTCGTCAAAAACAGGAAATGTTGGCCCAAAAACGGGAAAATTTTCGCCGTCATCTGGAAAAACTAGCAAAACAGGGTGTAGGTACTAGAGTGGAACTTTCTGATAAAAATCTGGCTGTCAAGCGTCAGAAAACAGAGGAGGCTGTTGCAGGTTCAAATAACCCACACTCTCTGAACCTTGAGCTAGAACCTGGACCTGTTGATATGATAAGAAATGAGAAAGCAGATATCAAACACACCTCTGAAGGGGTTTTAAAACAAATTTCAGGTTCAAATCCATTATCACCTGCAGCAATATCACACCCATTGCCAAAGATTTCAAAACTATCTTTAGTTTCACCCTCAGGGCCACTTTCAGGGCCAAGGTTCACTCCAAATCGATTTAAGTTAGATAATCGCCCAACAGCATTGAGAATTCTTCCACCTCTACCTCATGGTCTCTTGGATATTAGTGCATTGAAAGAACATTTTGCATTATTTGGTGATGTCTCTGCTGTGGAAGTAGAAGATGCTAAAGGCCAATGTGATCAAGCTTCAAAGATTTTAGAAACATGTGTTGTACGTGTTACTTATGTTACACGCCGGGCAGCTGAAAGAGCTTTTATTGAAGGTAGATGTTGGCAGGGGCAAAACTTGCAGCTGGTATGGGTGATGGCTTCCAACACCATAAACCATGAATTTAGAAAGAATACAGCATATCAAAATTCAAAAGGGAATTCTACAAAGGGAGATCTAATTGAAGTGGATACTGTGGGAGGACAAACTGTTACAAGGGATGATCCTACTAATACAGACATAAATGTTGCTGAAAGCTGCCCCACTGAGAGTGAGCAAAATGTAAAGGCATTAGTTTAAAAGGGAAGAAGTTTGACCCTGTATGCTACATAGATGTCTCCTGTGCGGTAACAAGCAAATGAAGCAGCTGAATTGGGTAGCAGCAGCACTGATGGAACTAGAGCTCAAATCAAGTTGTCAAATTTTGATGCCTTTTTCAAATCACACAGTTTCTTCTAACATGGTGAGTTGATTCAGCTCTTATAGTCAGTGCTGACAGATTGAGGACCCAGCCCTGCAAAAGAATATGTACATTTAATGGGTGCTGCATTGCATATAGTGTTCAAGTAATTTTTTAATTTTTTTTATTATGCAAATTGAACAGCTTAACTTGCAGGTGTAGATTTTCTGAGGCACGCCATAGTGTTGATCTATTCTATAGTTTAAACACCTTGTTCTAAATTCTGCACAGTTCAGCTGTCCAAGCTGCTGTCATCATTTTACTTGCAAAGTTGTAAATTTTACACAGGTCATTTTGTAAGCTAATAGTTGCTGTGCAATATTCTCAACTTGCATCCTCTGTGCAATGAGCTGCAAGTGGGAAGCGGCTTCTGTTTGCCATCTATGTGTTTTACTGGAGGTGATGGCCAATCAAAATTTGTGTTTACTGATCAGAACCTTCTTGTTATTTATTATTTTGGTTTGTTACC

Ace file of the UniGene sp_v3.0_unigene34214

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Zinc finger CCCH domain-containing protein 27; Oryza sativa subsp. japonica (Rice).	-	-	0.0	36%

Source	Gene names
Sma3	GSVIVT00020683001; OsI_15701; PHYPADRAFT_162484; POPTRDRAFT_1105061;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0JDM0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 509 - 903

Fln protein: NF**TQ*V*RYRHHCATQKTRRTGTYGVQADTGSDSSKHPESVGHVTHRNVVQRSRQGNQKAQRTLFVSCIPPQNNKAELLLSHFKKFGEVLGIYIPPNTDRAFVQYSSRKEAEGALTSTDAVMGNRFIKLAWARWDSTMELEKTNTTLASPGKTSNAMAVAIPVSPMLKQSISNSVLPFSPRNSTSEAINADTRSVKLMPTNESRSSTISTVNKQETLESLKLLRQKQEMLAQKRENFRRHLEKLAKQGVGTRVELSDKNLAVKRQKTEEAVAGSNNPHSLNLELEPGPVDMIRNEKADIKHTSEGVLKQISGSNPLSPAAISHPLPKISKLSLVSPSGPLSGPRFTPNRFKLDNRPTALRILPPLPHGLLDISALKEHFALFGDVSAVEVEDAKGQCDQASKILETCVVRVTYVTRRAAERAFIEGRCWQGQNLQLVWVMASNTINHEFRKNTAYQNSKGNSTKGDLIEVDTVGGQTVTRDDPTNTDINVAESCPTESEQNVKALV*

Protein Length: 510

Fln nts: AACTTCTGATGAACACAGTGAGTCTAAAGGTATCGGCATCATTGCGCGACACAGAAAACTAGAAGAACTGGCACATATGGAGTGCAGGCGGACACAGGCTCGGATTCATCCAAACATCCTGAAAGTGTTGGCCATGTAACTCATAGAAATGTGGTCCAAAGAAGCAGACAAGGGAACCAGAAGGCACAACGCACACTATTTGTATCTTGCATTCCTCCCCAAAACAACAAAGCAGAATTGCTGCTATCTCATTTTAAGAAATTTGGGGAGGTTCTTGGTATTTATATTCCACCAAACACTGACAGGGCTTTTGTGCAATATTCTAGTCGAAAAGAAGCTGAGGGGGCTCTCACTTCAACAGATGCTGTCATGGGGAACCGGTTCATCAAATTGGCATGGGCCAGGTGGGATAGCACAATGGAACTAGAGAAGACTAATACAACCTTAGCATCTCCTGGGAAGACTTCCAATGCAATGGCTGTTGCCATTCCAGTCTCGCCAATGCTGAAGCAAAGCATTAGTAACTCTGTTCTGCCATTCAGTCCTCGAAATTCAACATCTGAAGCAATTAACGCTGATACCCGTTCTGTTAAACTTATGCCAACAAATGAGTCAAGATCTTCAACAATTTCTACTGTTAATAAGCAGGAAACTCTAGAGTCTCTGAAGCTGCTTCGTCAAAAACAGGAAATGTTGGCCCAAAAACGGGAAAATTTTCGCCGTCATCTGGAAAAACTAGCAAAACAGGGTGTAGGTACTAGAGTGGAACTTTCTGATAAAAATCTGGCTGTCAAGCGTCAGAAAACAGAGGAGGCTGTTGCAGGTTCAAATAACCCACACTCTCTGAACCTTGAGCTAGAACCTGGACCTGTTGATATGATAAGAAATGAGAAAGCAGATATCAAACACACCTCTGAAGGGGTTTTAAAACAAATTTCAGGTTCAAATCCATTATCACCTGCAGCAATATCACACCCATTGCCAAAGATTTCAAAACTATCTTTAGTTTCACCCTCAGGGCCACTTTCAGGGCCAAGGTTCACTCCAAATCGATTTAAGTTAGATAATCGCCCAACAGCATTGAGAATTCTTCCACCTCTACCTCATGGTCTCTTGGATATTAGTGCATTGAAAGAACATTTTGCATTATTTGGTGATGTCTCTGCTGTGGAAGTAGAAGATGCTAAAGGCCAATGTGATCAAGCTTCAAAGATTTTAGAAACATGTGTTGTACGTGTTACTTATGTTACACGCCGGGCAGCTGAAAGAGCTTTTATTGAAGGTAGATGTTGGCAGGGGCAAAACTTGCAGCTGGTATGGGTGATGGCTTCCAACACCATAAACCATGAATTTAGAAAGAATACAGCATATCAAAATTCAAAAGGGAATTCTACAAAGGGAGATCTAATTGAAGTGGATACTGTGGGAGGACAAACTGTTACAAGGGATGATCCTACTAATACAGACATAAATGTTGCTGAAAGCTGCCCCACTGAGAGTGAGCAAAATGTAAAGGCATTAGTTTAA___AAGGGAAGAAGTTTGACCCTGTATGCTACATAGATGTCTCCTGTGCGGTAACAAGCAAATGAAGCAGCTGAATTGGGTAGCAGCAGCACTGATGGAACTAGAGCTCAAATCAAGTTGTCAAATTTTGATGCCTTTTTCAAATCACACAGTTTCTTCTAACATGGTGAGTTGATTCAGCTCTTATAGTCAGTGCTGACAGATTGAGGACCCAGCCCTGCAAAAGAATATGTACATTTAATGGGTGCTGCATTGCATATAGTGTTCAAGTAATTTTTTAATTTTTTTTATTATGCAAATTGAACAGCTTAACTTGCAGGTGTAGATTTTCTGAGGCACGCCATAGTGTTGATCTATTCTATAGTTTAAACACCTTGTTCTAAATTCTGCACAGTTCAGCTGTCCAAGCTGCTGTCATCATTTTACTTGCAAAGTTGTAAATTTTACACAGGTCATTTTGTAAGCTAATAGTTGCTGTGCAATATTCTCAACTTGCATCCTCTGTGCAATGAGCTGCAAGTGGGAAGCGGCTTCTGTTTGCCATCTATGTGTTTTACTGGAGGTGATGGCCAATCAAAATTTGTGTTTACTGATCAGAACCTTCTTGTTATTTATTATTTTGGTTTGTTACC

Fln Alignment:

Contig34214___NVVQRSRQGNQKAQRTLFVSCIPPQNNKAELLLSHFKKFGEVLGIYIPPNTDRAFVQYSSRKEAEGALTSTDAVMGNRFIKLAWARWDSTMELEKTNTTLASPGKTSNAMAVAIPVSPMLKQSISN--SVLPFSPRNSTSEAINADTRSVKLMPTNESRSSTISTVNKQETLESLKLLRQKQEMLAQKRENFRRHLEKLAKQGVGTRVELSDKNLAVKRQKTEEA--VAGSNNPH------SLNLELEPGPVDMIRNEKADIKHTSEGVLKQISGSNPLSPAAISHPLPKIXXXXXXXXXXXXXXXRFTPNRFKLDNRPTALRILPPLPHGLLDISALKEHFALFGDVSAVEVEDAKG-QCDQASKILEXXXXXXXXXXXXXXXXXFIEGRCWQGQNLQLVWVMAS--NTINHEFRKNT--AYQNSKGNSTKGDLIEVDTVGGQTVTRDDPTNTDINVAESCPTESEQNVKALV*KGRS
Q0JDM0_______________DVGRQSNRASHKASRTLYVNGIPLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAVMGNRFIKLWWANRDRIPD-EVEGRIPAKSSHMSAALANSVPQPSSSNRGKENLQSATPRASSGSSAEASGPGT-GHKMLPANSVKSLPPDT-KRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQ----------KGLANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTE-GP----RDAAGTLQNRTSGEL----ASSSHKSSATSAQKPAVATKQTSPLLVP------SQNRFKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSSVVLEDTEAYNHDATLKPSLSCSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGSTNHSRFQKTSIPARASSFSSQTQNMPSESSTTVGKMSSTVKSSTTAKPHSESMPTATSAKTSVEIPKALS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1090	14			85	0.993533
1091	14	85			0.993533
1093			14	85	0.993533
1094		85		14	0.993533
1099	12			87	0.992554
1100	12	87			0.992554
1102	87		12		0.992554
1103		87		12	0.992554
1106		87		12	0.992554
1109	12		87		0.992554
1110		12	87		0.992554
1114		87	12		0.992554
1118		12	87		0.992554
1120			12	87	0.992554
1159		12		87	0.992554
1184	25		75		1.0
1190	12		87		0.992554
1253		83		16	0.994512
1254			83	16	0.994512
1353			25	75	0.996473
1455		75	25		0.996473
1555		75	25		0.996473
1562		28	71		1.0
1594	12	87			0.992554
1597		87		12	0.992554
1752	25		75		1.0
1753	75		25		1.0
1797	22			55	0.999999
1799	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain