SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34146

Length: 2936 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene34146
ATATTTAGCAGCTCTTTATAATATATATGCTGTTTGTAGTTCTTCAGTGTTTTGCGTGCATTGACCTTAAAGGAAATGGTCTCTCAGGCCAAATTCCGGACGAGATTGGAGATTGCTCTGCATTGAAAGTCTTAGATGTCTCTTTAAATTATTTATATGGAGACATTCCCTTTTCAATATCGAAGTTGAAACAACTAGAACAACTGATTGTGAAGAATAACCAGTTAATGGGGCCTATACCTTCAACGTTGTCTCAGATTCCAAACTTGAAGAAAATGGATTTTGCAGACAATCAATTAAGTGGGGAGATCCCCAGGCTTATCTATTGGAATGAAGTTTTGCAATATTTGGGGCTGCGCAACAACTTCTTAGTTGGGACTCTTTCCCCTGACATGTGTCAATTGACAGGATTGTGGTTCTTTGATGTGCGAGGCAACAACTTGTCAGGGACCATTCCTGAGAATATTGGCAACTGTACAAGCTATGCAGTTTTGGACTTATCATACAATCAACTTACCGGAGAGATCCCCTTCAATATTGGGTTTCTACAAGTGGCTACTCTGTCGTTACAAGGAAACAAGCTGACCGGAAGGATACCTGAAGTAATTGGTCTCATGCAGGCTCTCACTGTTCTGGATTTGAGTGATAATCATCTTACTGGAACAATTCCCCCGATTCTAGGCAACTTGACTTACACTGATAAACTATATTTGCACAGTAATAATCTCACGGGATCTATTCCACCAGAACTGGGGAACATGACAAAGCTGGGATACCTGCAGCTAAATGACAATCAGCTGACTGGGCAAATTCCACCTGAGCTGGGGAATTTGGAACAGCTGTTCGAATTAAATCTTGCCAGAAATCAACTTGAAGGTCCGATCCCAGAGAATATTAGTTCATGTGTTGCTCTTATTTTCTTCAATGTGCATGGCAACCGTTTGAATGGAACTATTCCTTTGGAATTTCAAAAACTTAACAGGCTAACTTATCTAAATCTGTCTTCCAACAATATCACGGGAACAATTCCTGTAGAGCTGGGGCGTATTATAAATTTAGACAGATTGGACATTTCTAACAATAATATATCTGGACCTATCCCGAGATCTATTGGGAACATGGAACATCTATTAAAATTGAACTTGAGTGGAAATAAACTCAGTGGGTTTGTCCCTGCAGACTTGGGAAACTTGAGAAGTATCGGGGATATGGACCTTTCTGCCAACCAATTATCGGGTCCTATTCCTTCAGAACTTGGACAACTACAGAATTTGGTCTCACTGATACTGAATAACAACAGTTTATCAGGGGAGATGCCATGGCAGTTGACCAACTGCTTTAGCCTTACTACTCTAAACCTCTCCTACAACAATTTGTCTGGGAATATTCCTGTCACACAGAACTTTACAAGGTTTACCCCAGAAAGTTTTTTTGGAAATCCAGGTCTCTGCGGTTATTGGATTGGATCACTTTGTGGGATATCTGCCAGACAACCAAAAGCTTCTGTGTCAACAACAGCTATTGTTTGCATCTCATTGGGTTCAGTGATATTAGTGTGTGTAATCACCATCGCTCTCTACCTTTCAAATCAACACAAACCATTCACTAAAGGGTCATCAAGCAAAACGGGTCAAGGTTCTCCAAGGCTTGTAATATTGCACATGGATATGGCCCTATACATGTATGATGATATAATGAGAATGACCGAAAATTTGAATGAGAAATTTATAATTGGCAATGGTGCTACAAGCACAGTTTACAGATGTGATCTTAAGAACTGTAAGCCAGTTGCTATTAAAAGACTATACACACACTATCCACAAAGCTTGCGGGAATTCGAAACTGAGTTAGAGACTGTTGGAAGTATCAAACATCGGAATCTTGTCAGTTTGCGTGGGTACTCTCTTTCGCCACATGGCAACTTGCTGTTCTATGACTACATGGTAAACGGAAGTTTGTGGGACATCTTACACGGATCTTCCAAGAAGATTAAGCTAGACTGGAACACTCGTCTAAGGATTGCTTTGGGGGCTGCACAAGGTTTAGCATATCTGCATCATGACTGTAATCCACGTATTATTCACAGAGATGTAAAGACTTCCAATATTCTGTTAGATGACAATTTTGAAGCGCATCTGTCAGATTTTGGTATTGCCAAGTGTATCCCTTCTGCAAAAACCCATGCTTCTACCTATGTTATGGGCACCATTGGTTACATTGACCCTGAATATGCAAGGACGTTGAGGCTCAACGAGAAATCCGATGTGTACAGCTATGGCATTGTTCTTTTGGAGCTACTGACTGGGAGAAAAGCTGTGGATAATGATTCTAATTTACATCAGTTGATTCTCTCTAAAGCAGACAACAACATGGTCATGGAAACTGTTGACCCGGAAGTAGTAGCAACCTGCATAGATCTTGAGACTGTAAGAAAGATCTTCCAGCTTGCACTGCTTTGCACAAAGAGACAGCCATCAGACCGTCCCACCATGCATGATGTTGCTAGGGTTTTACAGTCATTATTGCCAGCTTCTAAACAAGCTCCAAGTAGCAGAGTAAACCAACCAGCAGCCAGTAACAACTACAGGAGATACTTGGATGAGTACACTGAAGGAAGTCATAGAGATGTTAGGGGCAGCAGCACAAGCAGCAGCACTTCTGATGGGCAATTATTTGTGAGATTTGGTGAGGTTATTTCACAGAACATTGTTTGACAGAAACCTTTGGATTGAGCTCATGATCAAAAGTGTATCGTATTGTTGAATTCTACCTTCAGTGCAGTCATTTCATAAAAACTTAAATTTTGTAGTTTTGGGTTTTCAACAAAGTCAGCTGCCGAAAGTCTGGACTTGTTAATACAAGATTACATTGCCAAATAAACAAACCATATATGGCATGCAGTTGAAGTTGTACCCAAACATTAACTTAACGAGGTG

Ace file of the UniGene sp_v3.0_unigene34146 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transmembrane protein kinase [Oryza sativa Japonica Group] dbj\|BAD67663.1\| putative transmembrane protein kinase [Oryza sativa Japonica Group] gb\|EEC79921.1\| hypothetical protein OsI_21484 [Oryza sativa Indica Group]	-	-	0.0	67%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	38%
Sma3	Leucine-rich repeat protein kinase	-	-	7.913e-14	-

Source	Gene names
Sma3	AT2G26330; AT5G07180; AT5G62230; At2g26330; At5g07180; At5g62230/mmi9_50; ER; ERECTA; ERL1; ERL1a; ERL1b; ERL1c; ERL1d; ERL2; ERL2a; ERL2b; GSVIVT00032282001; GSVIVT00038499001; LRR-RLK; OJ1534_E09.14; OSJNBa0016O19.39; Os02g0777400; Os06g0130100; Os06g02

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	stomatal complex morphogenesis	GO:0010103	Biological Process	-
Sma3	regulation of cell adhesion	GO:0030155	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62230.1	ERL1 ERECTA-like 1 chr5:24996433-25002130 FORWARD LENGTH=966	69%
RefSeq	Arabidopsis thaliana	NP_201029.1	LRR receptor-like serine/threonine-protein kinase ERL1 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002318267.1	leucine-rich repeat protein kinase [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 83 aas, putative chimeric sequence, your sequence is shorter than subject: 904 - 1145

Fln protein: I*QLFIIYMLFVVLQCFACIDLKGNGLSGQIPDEIGDCSALKVLDVSLNYLYGDIPFSISKLKQLEQLIVKNNQLMGPIPSTLSQIPNLKKMDFADNQLSGEIPRLIYWNEVLQYLGLRNNFLVGTLSPDMCQLTGLWFFDVRGNNLSGTIPENIGNCTSYAVLDLSYNQLTGEIPFNIGFLQVATLSLQGNKLTGRIPEVIGLMQALTVLDLSDNHLTGTIPPILGNLTYTDKLYLHSNNLTGSIPPELGNMTKLGYLQLNDNQLTGQIPPELGNLEQLFELNLARNQLEGPIPENISSCVALIFFNVHGNRLNGTIPLEFQKLNRLTYLNLSSNNITGTIPVELGRIINLDRLDISNNNISGPIPRSIGNMEHLLKLNLSGNKLSGFVPADLGNLRSIGDMDLSANQLSGPIPSELGQLQNLVSLILNNNSLSGEMPWQLTNCFSLTTLNLSYNNLSGNIPVTQNFTRFTPESFFGNPGLCGYWIGSLCGISARQPKASVSTTAIVCISLGSVILVCVITIALYLSNQHKPFTKGSSSKTGQGSPRLVILHMDMALYMYDDIMRMTENLNEKFIIGNGATSTVYRCDLKNCKPVAIKRLYTHYPQSLREFETELETVGSIKHRNLVSLRGYSLSPHGNLLFYDYMVNGSLWDILHGSSKKIKLDWNTRLRIALGAAQGLAYLHHDCNPRIIHRDVKTSNILLDDNFEAHLSDFGIAKCIPSAKTHASTYVMGTIGYIDPEYARTLRLNEKSDVYSYGIVLLELLTGRKAVDNDSNLHQLILSKADNNMVMETVDPEVVATCIDLETVRKIFQLALLCTKRQPSDRPTMHDVARVLQSLLPASKQAPSSRVNQPAASNNYRRYLDEYTEGSHRDVRGSSTSSSTSDGQLFVRFGEVISQNIV*

Protein Length: 905

Fln nts: ATATTTAGCAGCTCTTTATAATATATATGCTGTTTGTAGTTCTTCAGTGTTTTGCGTGCATTGACCTTAAAGGAAATGGTCTCTCAGGCCAAATTCCGGACGAGATTGGAGATTGCTCTGCATTGAAAGTCTTAGATGTCTCTTTAAATTATTTATATGGAGACATTCCCTTTTCAATATCGAAGTTGAAACAACTAGAACAACTGATTGTGAAGAATAACCAGTTAATGGGGCCTATACCTTCAACGTTGTCTCAGATTCCAAACTTGAAGAAAATGGATTTTGCAGACAATCAATTAAGTGGGGAGATCCCCAGGCTTATCTATTGGAATGAAGTTTTGCAATATTTGGGGCTGCGCAACAACTTCTTAGTTGGGACTCTTTCCCCTGACATGTGTCAATTGACAGGATTGTGGTTCTTTGATGTGCGAGGCAACAACTTGTCAGGGACCATTCCTGAGAATATTGGCAACTGTACAAGCTATGCAGTTTTGGACTTATCATACAATCAACTTACCGGAGAGATCCCCTTCAATATTGGGTTTCTACAAGTGGCTACTCTGTCGTTACAAGGAAACAAGCTGACCGGAAGGATACCTGAAGTAATTGGTCTCATGCAGGCTCTCACTGTTCTGGATTTGAGTGATAATCATCTTACTGGAACAATTCCCCCGATTCTAGGCAACTTGACTTACACTGATAAACTATATTTGCACAGTAATAATCTCACGGGATCTATTCCACCAGAACTGGGGAACATGACAAAGCTGGGATACCTGCAGCTAAATGACAATCAGCTGACTGGGCAAATTCCACCTGAGCTGGGGAATTTGGAACAGCTGTTCGAATTAAATCTTGCCAGAAATCAACTTGAAGGTCCGATCCCAGAGAATATTAGTTCATGTGTTGCTCTTATTTTCTTCAATGTGCATGGCAACCGTTTGAATGGAACTATTCCTTTGGAATTTCAAAAACTTAACAGGCTAACTTATCTAAATCTGTCTTCCAACAATATCACGGGAACAATTCCTGTAGAGCTGGGGCGTATTATAAATTTAGACAGATTGGACATTTCTAACAATAATATATCTGGACCTATCCCGAGATCTATTGGGAACATGGAACATCTATTAAAATTGAACTTGAGTGGAAATAAACTCAGTGGGTTTGTCCCTGCAGACTTGGGAAACTTGAGAAGTATCGGGGATATGGACCTTTCTGCCAACCAATTATCGGGTCCTATTCCTTCAGAACTTGGACAACTACAGAATTTGGTCTCACTGATACTGAATAACAACAGTTTATCAGGGGAGATGCCATGGCAGTTGACCAACTGCTTTAGCCTTACTACTCTAAACCTCTCCTACAACAATTTGTCTGGGAATATTCCTGTCACACAGAACTTTACAAGGTTTACCCCAGAAAGTTTTTTTGGAAATCCAGGTCTCTGCGGTTATTGGATTGGATCACTTTGTGGGATATCTGCCAGACAACCAAAAGCTTCTGTGTCAACAACAGCTATTGTTTGCATCTCATTGGGTTCAGTGATATTAGTGTGTGTAATCACCATCGCTCTCTACCTTTCAAATCAACACAAACCATTCACTAAAGGGTCATCAAGCAAAACGGGTCAAGGTTCTCCAAGGCTTGTAATATTGCACATGGATATGGCCCTATACATGTATGATGATATAATGAGAATGACCGAAAATTTGAATGAGAAATTTATAATTGGCAATGGTGCTACAAGCACAGTTTACAGATGTGATCTTAAGAACTGTAAGCCAGTTGCTATTAAAAGACTATACACACACTATCCACAAAGCTTGCGGGAATTCGAAACTGAGTTAGAGACTGTTGGAAGTATCAAACATCGGAATCTTGTCAGTTTGCGTGGGTACTCTCTTTCGCCACATGGCAACTTGCTGTTCTATGACTACATGGTAAACGGAAGTTTGTGGGACATCTTACACGGATCTTCCAAGAAGATTAAGCTAGACTGGAACACTCGTCTAAGGATTGCTTTGGGGGCTGCACAAGGTTTAGCATATCTGCATCATGACTGTAATCCACGTATTATTCACAGAGATGTAAAGACTTCCAATATTCTGTTAGATGACAATTTTGAAGCGCATCTGTCAGATTTTGGTATTGCCAAGTGTATCCCTTCTGCAAAAACCCATGCTTCTACCTATGTTATGGGCACCATTGGTTACATTGACCCTGAATATGCAAGGACGTTGAGGCTCAACGAGAAATCCGATGTGTACAGCTATGGCATTGTTCTTTTGGAGCTACTGACTGGGAGAAAAGCTGTGGATAATGATTCTAATTTACATCAGTTGATTCTCTCTAAAGCAGACAACAACATGGTCATGGAAACTGTTGACCCGGAAGTAGTAGCAACCTGCATAGATCTTGAGACTGTAAGAAAGATCTTCCAGCTTGCACTGCTTTGCACAAAGAGACAGCCATCAGACCGTCCCACCATGCATGATGTTGCTAGGGTTTTACAGTCATTATTGCCAGCTTCTAAACAAGCTCCAAGTAGCAGAGTAAACCAACCAGCAGCCAGTAACAACTACAGGAGATACTTGGATGAGTACACTGAAGGAAGTCATAGAGATGTTAGGGGCAGCAGCACAAGCAGCAGCACTTCTGATGGGCAATTATTTGTGAGATTTGGTGAGGTTATTTCACAGAACATTGTTTGA___CAGAAACCTTTGGATTGAGCTCATGATCAAAAGTGTATCGTATTGTTGAATTCTACCTTCAGTGCAGTCATTTCATAAAAACTTAAATTTTGTAGTTTTGGGTTTTCAACAAAGTCAGCTGCCGAAAGTCTGGACTTGTTAATACAAGATTACATTGCCAAATAAACAAACCATATATGGCATGCAGTTGAAGTTGTACCCAAACATTAACTTAACGAGGTG

Fln Alignment:

Contig34146___FVVLQCFACIDLKGNGLSGQIPDEIGDCSALKVLDVSLNYLYGDIPFSISKLKQLEQLIVKNNQLMGPIPSTLSQIPNLKKMDFADNQLSGEIPRLIYWNEVLQ-YLGLRNNFLVGTLSPDMCQLTGLWFFDVRGNN------------------------LSGTIPENIGNCTSYAVLDLSYNQLTGEIPFNIGFLQ-VATLSLQGNKLTGRIPEVIGLMQALTVLDLSDNHLTGTIPPILGNLTYTDKLYLHSNNLTGSIPPELGNMTKLGYLQLNDNQLTGQIPPELGNLEQLFELNLARNQLEGPIPENISSCVALIFFNVHGNRLNGTIPLEFQKLNRLTYLNLSSNNITGTIPVELGRIINLDRLDISNNNISGPIPRSIGNMEHXXXXXXXXXXXXGFVPADLGN------------------------LRSIGDMDLSANQLSGPIPSELGQLQXXXXXXXXXXXXSGEMPWQLTNC
Q9FEU2_______________FAVLGSLRSLVISAANLTGSIPAEIGGYESLEILDLSGNRLRGNIPAEISKLKNLKSLILNSNQLQGSIPAEIGNCHNLVDLVVFDNQLSGKIPAELGRLANLEVFRAGGNENIEGTLPDELSNCTNLVTLGLAETNISGKIPLSFGSLKKLQTLAIYTAFLSGTIPAELGNCSELVNLYLYENRLSGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIPDSFGSLKNLSELEITDNNVSGSIPAALANCTELTQIQLYNNQISGQMPAELGALKKLTVLFLWQNNLEGPIPSSLGSCDNLQSLDLSHNRLTGSIPPSLFEIKNLTKLLLLSNELTGALPPEIGNCVALSRLRLGNNRLLNQIPREIGKLENLVFLDLAMNQFSGSIPAEIGGCSQLQMLDLHGNRLGGELPRALGFLHGLQVVDLSANELTGLIPANLGNLVALTKLTLNGNALSGAIPWEISRC

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
2232	25		75		0.996473
2234			25	75	0.996473
2313	16		83		0.994512
2314	83			16	0.994512
2339	14		85		0.993533
2342	85		14		0.993533
2473	80		20		0.999996
2532		10		90	0.90298
2623		28	71		1.0
2732	83	16			0.994512
2733		16	83		0.994512
2734		16		83	0.994512
2787	75	25			0.996473
2855	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain