SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34128

Length: 2424 nt

UniGene Fasta

>sp_v3.0_unigene34128
CGTTCTTTGAGCGTTTGCAAATTTGTTTTCAATTGTTTGATGTATTTTGGCAGAAAATGGGCCAGTATGCTGTGGCGATGGAGCCCGGACGCGAAGGAAAGAATGGCGCGCCGTCGGTTGGTCCCGTTTACAGAAACATATGGTCTAAAGACGGTTTTCCTCAGCCACTGCCTGGTTTGTCGACGTTGTGGGAGGTTTTCAGCACTGCTTGTAAAAAAAACTCCTTTAGGAGGATGGTTGGGCACAGGGAAATTCATAATGGAAAGGCAGGCAAATATGTATGGCAAACATATGGGGAGGTCTTTGATCAGGTGTTGAATGTAGGAGCTGCTATGCGTACATGTGGCATTGAACCATTTGGACGCTGTGGAATTTATGGAATAAATTGTCCTGAATGGATTATAGCAATGGAGGCATGCTGTGGTCATAGTATTACCTGTGTCCCTCTCTATGATACACTCGGAGAAAATGCTGTTGAGTTCATCTTAAGGCATGCTGAGATCAACATTGTATTTGTTCAAGACATCAAAATCCCAAATCTATTCAAGTCTATACAAAAGGGTCCTGGACATCTAAAGGCTTTAGTCTCTTTTTCAAGTATTACTGATGAGCAAGAGGAAGAAGCTGGCAGGTTGGGAATAGCAGCATACTCCTGGAAGATGTTTCTAAAGCTGGGAAAACAGAATCCTACAGAACTCTCACCACCTGTGCCTGAGGACATTTCCACAATCATGTATACAAGTGGAACCAGTGGAGAACCAAAGGGTGTTATCTTGACTCATGAGGCACTTACACAGACTATAGCTGGAACTGAACTTGTCTTTGAAAAAGTTAAAGAAAAGATGACAACTGAGGATGTTTATTTATCTTTCCTTCCACTGGCTCATATCTTTGACCGTGTCATTGAAGAATTCTTTTTCCATCGGGGTGCCTCAGTGGGATATTGGCAAGGGGATACTAAATTACTTGGAGATGATTTAATGGAGTTGAAGCCAACTTTATTTGCAGGCGTGCCTAGAGTTTTTGATCGCATTTTTGCAGGAGGCATGAAAAGACTCAAGGAGAGTGGTATGATGACGAGATTAATTTTTAACTCTCTATATAACTATAAGCTTTCATGGATGAAACTAGGCTTCAGGCAATGTCAAGCATCACCACTGGCAGATGTAATTTTGTTTAGTAAGATTAAAGCAAGATTAGGAGGTCGGGTACGACTTATATTGTCTGGAGCAGCTCCCTTAAGTAGTTCCGTGGAGGAATTTTTAAGAGTAACTACTTGTTGTCATGTTTTACAAGGATATGGATTGACAGAAACTTGTGGATGGAGTTCTGTTGCATTACCAGATGATTTATCAATGTTAGGTACTGTTGGTCCTGTATCTCCAACAGCTGAAGTGCGCCTTGAGTCAGTCCCAGAAATGGGTTATGATGCATTGGCAGATACCTCTCAGGGTGAGCTCTGTTTCAGGGGTAAGACACTGTTTTCTGGGTATTACAAGAGAGATGACCTTACAAAAGAAGCTTTCAAAGATGGCTGGTTTCACACAGGGGATATTGGTGAGTTGCAGCCAAATGGTTCATTGAAAATCATCGACAGGAAGAAGAACATATTCAAACTCTCACAAGGAGAGTATATTGCGGTCGAGAATCTTGAGAACGTCTATGGACAATGTTCCTGTGTAGATGTAATTTGGATTTATGGCAACAGCTTTGAGTCATCTTTGGTGGCCGTGGTTGTACCAAACCAAGAGGAGGCTGAATCTTGGGCTAGACAGAATGGCCTAGATGGCGATTTCAATGAATTGTGTTCGGAACCTAAATTGAGAAGTCACATACTCGAGGAGCTGACTGCTGTTGCTAAAGCGAAAAATCTCAGAGGGTTTGAACACATTAAGGCCGTCCATCTAGATCCTCAACTGTTCGACGTGGAAAGAGATCTACTGACACCCACTTTCAAGAAAAAGAGACCCCAGCTGCTGAAGTATTATCAGGATCAAATTAACAATATGTACGAGAGTTTGAAAAACTGATAAGTCTTCTGCGATATCATAAAAGAGATTGTATGCTCATCTCTGGGTGAAAGGGGAAGGTTGCAATAGCTTTATTTCTGCGCGTTTCATCCTATGCTGCTTGGAAATTGGTGTGTATATTTTCGGAAGCTTGGGAGTAGTTCTAGCACACTGTGCCAGCATAGAATTTTACATCGAATTTGATCAAGGAGAATAATTATATGATTTCTTTTATTGAAATATTGCAGTCTTTGTGTGACTATAGGATACATACCGAGAGCCAGGTATTATGTACCTTAGATGTGTCTTACGTGTGATAAACATAAGACCATATTTTATGAGTGAAAGGGAACTTTTACAATTAAGATAGATGTATTTTAATTTTGAATTTTTACCATGTTAAAATATATTTTTA

Ace file of the UniGene sp_v3.0_unigene34128

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Long-chain acyl-CoA synthetase 4 n=2 Tax=Ricinus communis RepID=B3TZ27_RICCO	-	-	0.0	58%
FL-Next	sp=Long chain acyl-CoA synthetase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Sma3	Putative acyl-CoA synthetase	-	-	5.455e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid metabolism	00071		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	8F2.21; ACS1; ACS2; AT2G47240; AT4g11030; AT4g23850; At1g49430; At1g64400; At2g47240; At3g05970; At4g11030; At4g23850; AtLACS6; CHLREDRAFT_111160; CHLREDRAFT_113915; CHLREDRAFT_123147; F13F21.14; F15H21.7; F2O10.7; F8M12.15; GSVIVT00006758001; GSVIVT00019

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cutin biosynthetic process	GO:0010143	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G23850.1	LACS4 AMP-dependent synthetase and ligase family protein chr4:12403720-12408263 REVERSE LENGTH=666	57%
RefSeq	Arabidopsis thaliana	NP_194116.1	long chain acyl-CoA synthetase 4 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002304555.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9T0A0

Fln msg:

Fln protein: MGQYAVAMEPGREGKNGAPSVGPVYRNIWSKDGFPQPLPGLSTLWEVFSTACKKNSFRRMVGHREIHNGKAGKYVWQTYGEVFDQVLNVGAAMRTCGIEPFGRCGIYGINCPEWIIAMEACCGHSITCVPLYDTLGENAVEFILRHAEINIVFVQDIKIPNLFKSIQKGPGHLKALVSFSSITDEQEEEAGRLGIAAYSWKMFLKLGKQNPTELSPPVPEDISTIMYTSGTSGEPKGVILTHEALTQTIAGTELVFEKVKEKMTTEDVYLSFLPLAHIFDRVIEEFFFHRGASVGYWQGDTKLLGDDLMELKPTLFAGVPRVFDRIFAGGMKRLKESGMMTRLIFNSLYNYKLSWMKLGFRQCQASPLADVILFSKIKARLGGRVRLILSGAAPLSSSVEEFLRVTTCCHVLQGYGLTETCGWSSVALPDDLSMLGTVGPVSPTAEVRLESVPEMGYDALADTSQGELCFRGKTLFSGYYKRDDLTKEAFKDGWFHTGDIGELQPNGSLKIIDRKKNIFKLSQGEYIAVENLENVYGQCSCVDVIWIYGNSFESSLVAVVVPNQEEAESWARQNGLDGDFNELCSEPKLRSHILEELTAVAKAKNLRGFEHIKAVHLDPQLFDVERDLLTPTFKKKRPQLLKYYQDQINNMYESLKN*

Protein Length: 659

Fln nts: CGTTCTTTGAGCGTTTGCAAATTTGTTTTCAATTGTTTGATGTATTTTGGCAGAAA_-_ATGGGCCAGTATGCTGTGGCGATGGAGCCCGGACGCGAAGGAAAGAATGGCGCGCCGTCGGTTGGTCCCGTTTACAGAAACATATGGTCTAAAGACGGTTTTCCTCAGCCACTGCCTGGTTTGTCGACGTTGTGGGAGGTTTTCAGCACTGCTTGTAAAAAAAACTCCTTTAGGAGGATGGTTGGGCACAGGGAAATTCATAATGGAAAGGCAGGCAAATATGTATGGCAAACATATGGGGAGGTCTTTGATCAGGTGTTGAATGTAGGAGCTGCTATGCGTACATGTGGCATTGAACCATTTGGACGCTGTGGAATTTATGGAATAAATTGTCCTGAATGGATTATAGCAATGGAGGCATGCTGTGGTCATAGTATTACCTGTGTCCCTCTCTATGATACACTCGGAGAAAATGCTGTTGAGTTCATCTTAAGGCATGCTGAGATCAACATTGTATTTGTTCAAGACATCAAAATCCCAAATCTATTCAAGTCTATACAAAAGGGTCCTGGACATCTAAAGGCTTTAGTCTCTTTTTCAAGTATTACTGATGAGCAAGAGGAAGAAGCTGGCAGGTTGGGAATAGCAGCATACTCCTGGAAGATGTTTCTAAAGCTGGGAAAACAGAATCCTACAGAACTCTCACCACCTGTGCCTGAGGACATTTCCACAATCATGTATACAAGTGGAACCAGTGGAGAACCAAAGGGTGTTATCTTGACTCATGAGGCACTTACACAGACTATAGCTGGAACTGAACTTGTCTTTGAAAAAGTTAAAGAAAAGATGACAACTGAGGATGTTTATTTATCTTTCCTTCCACTGGCTCATATCTTTGACCGTGTCATTGAAGAATTCTTTTTCCATCGGGGTGCCTCAGTGGGATATTGGCAAGGGGATACTAAATTACTTGGAGATGATTTAATGGAGTTGAAGCCAACTTTATTTGCAGGCGTGCCTAGAGTTTTTGATCGCATTTTTGCAGGAGGCATGAAAAGACTCAAGGAGAGTGGTATGATGACGAGATTAATTTTTAACTCTCTATATAACTATAAGCTTTCATGGATGAAACTAGGCTTCAGGCAATGTCAAGCATCACCACTGGCAGATGTAATTTTGTTTAGTAAGATTAAAGCAAGATTAGGAGGTCGGGTACGACTTATATTGTCTGGAGCAGCTCCCTTAAGTAGTTCCGTGGAGGAATTTTTAAGAGTAACTACTTGTTGTCATGTTTTACAAGGATATGGATTGACAGAAACTTGTGGATGGAGTTCTGTTGCATTACCAGATGATTTATCAATGTTAGGTACTGTTGGTCCTGTATCTCCAACAGCTGAAGTGCGCCTTGAGTCAGTCCCAGAAATGGGTTATGATGCATTGGCAGATACCTCTCAGGGTGAGCTCTGTTTCAGGGGTAAGACACTGTTTTCTGGGTATTACAAGAGAGATGACCTTACAAAAGAAGCTTTCAAAGATGGCTGGTTTCACACAGGGGATATTGGTGAGTTGCAGCCAAATGGTTCATTGAAAATCATCGACAGGAAGAAGAACATATTCAAACTCTCACAAGGAGAGTATATTGCGGTCGAGAATCTTGAGAACGTCTATGGACAATGTTCCTGTGTAGATGTAATTTGGATTTATGGCAACAGCTTTGAGTCATCTTTGGTGGCCGTGGTTGTACCAAACCAAGAGGAGGCTGAATCTTGGGCTAGACAGAATGGCCTAGATGGCGATTTCAATGAATTGTGTTCGGAACCTAAATTGAGAAGTCACATACTCGAGGAGCTGACTGCTGTTGCTAAAGCGAAAAATCTCAGAGGGTTTGAACACATTAAGGCCGTCCATCTAGATCCTCAACTGTTCGACGTGGAAAGAGATCTACTGACACCCACTTTCAAGAAAAAGAGACCCCAGCTGCTGAAGTATTATCAGGATCAAATTAACAATATGTACGAGAGTTTGAAAAACTGA___TAAGTCTTCTGCGATATCATAAAAGAGATTGTATGCTCATCTCTGGGTGAAAGGGGAAGGTTGCAATAGCTTTATTTCTGCGCGTTTCATCCTATGCTGCTTGGAAATTGGTGTGTATATTTTCGGAAGCTTGGGAGTAGTTCTAGCACACTGTGCCAGCATAGAATTTTACATCGAATTTGATCAAGGAGAATAATTATATGATTTCTTTTATTGAAATATTGCAGTCTTTGTGTGACTATAGGATACATACCGAGAGCCAGGTATTATGTACCTTAGATGTGTCTTACGTGTGATAAACATAAGACCATATTTTATGAGTGAAAGGGAACTTTTACAATTAAGATAGATGTATTTTAATTTTGAATTTTTACCATGTTAAAATATATTTTTA

Fln Alignment:

Contig34128___QYAVAMEPGREGKNGAPSVGPVYRNIWSKDGFPQPLPGLSTLWEVFSTACKKNSFRRMVGHREIHNGKAGKYVWQTYGEVFDQVLNVGAAMRTCGIEPFGRCGIYGINCPEWIIAMEACCGHSITCVPLYDTLGENAVEFILRHAEINIVFVQDIKIPNLFKSIQKGPGHLKALVSFSSITDEQEEEAGRLGIAAYSWKMFLKLGKQNPTELSPPVPEDISTIMYTSGTSGEPKGVILTHEALTQTIAGTELVFEKVKEKMTTEDVYLSFLPLAHIFDRVIEEFFFHRGASVGYWQGDTKLLGDDLMELKPTLFAGVPRVFDRIFAGGMKRLKESGMMTRLIFNSLYNYKLSWMKLGFRQCQASPLADVILFSKIKARLGGRVRLILSGAAPLSSSVEEFLRVTTCCHVLQGYGLTETCGWSSVALPDDLSMLGTVGPVSPTAEVRLESVPEMGYDALADTSQGELCFRGKTLFSGYYKRDDLTKEAFKDGWFHTGDIGELQPNGSLKIIDRKKNIFKLSQGEYIAVENLENVYGQCSCVDVIWIYGNSFESSLVAVVVPNQEEAESWARQNGLDGDFNELCSEPKLRSHILEELTAVAKAKNLRGFEHIKAVHLDPQLFDVERDLLTPTFKKKRPQLLKYYQDQINNMYESL
Q9T0A0_______________KYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSHVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTI

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
770		14		85	0.999981
1039		88	11		0.923564
1068	11		88		0.923564
1069	11		88		0.923564
1071	88		11		0.923564
1084	14			85	0.993533
1085	85	14			0.993533
1168		16		83	0.994512
1239		12		87	0.992554
1398		86		13	0.999973
1502	88		11		0.999952
1815		78		21	1.0
2105			5	84	0.999846
2299	57	28			1.0
2345		25		75	1.0
2369	88			11	0.923564
2371			12	87	0.992554
2375		12	87		0.992554
2378	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain