SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene34070

Length: 3270 nt

UniGene Fasta

>sp_v3.0_unigene34070
ATGGGGGACGCTTCCTTCTTCGATAAATAGATGATTAAAAATAAATGACGTTTTATATGAAACATGACTTTAATTAAAGAAAGGAAAATGAAAGGGGGGCCTTGGCACAAACATCGTAAAATCCGCCCTGTAAATGCTGCATAGCTAACCTGACACTGCTTCGCGCATGTGTGGTATGCATTCTTAGGGTTTGTTTATTCTTCATTCACGTGTTCTGTGAATTCTCTGTAGAGGTATGTTAGCCTCCTTCACCTGGCCGATGAGTCCCGCTACTGAAGATCAGTTGCTTTCGATGAGCAAGGTTTTAAATTTTGCTTAAGTTTCTTAAGTTACTGGCCAGATGCAAGCGACCCAACTGTGCCCTTGTTGCAGTCATCATTAAAAGCAGATTCTCTGGCATCTGTCCAGCAATAAACCCTGTTCACAAAGATGAATGCCTACATTGTTGGCATCCTTGTGCCTGTGCTGCTATCATTCGTGTTAAGGAACAGAAGAAAGGGAAAGGTATATGGAGTGCCTGTGGATGTGGACGGGGATGGTGGTTTTGCAATCCGACACCATCGCAGTTCTTCCTTAGTTGAAACGCCGTGGGAAGGAGCTTCAACTCTTGCGGACCTCTTTGAGCAAGCATGCAAAAGACATGCACAAATGCGCTTACTCGGAACCCGAAAGCTGATTAGCAGAGAAATGAAAGTCAGTGAAGATGGCAGGAGTTTTGAAAAGCTACATCTGGGAGATTATGAGTGGTTAAGTTATGGGCAAGTACTCGAGCGTGTTTGTAACTTTGCATCAGGTTTGGTAGCACTTGGTCATGAAAAAGGAGAGCGTGTTGCCATTTTTGCTGAAACTCGAGCAGAATGGTTCATTGCCTTGCAAGGTTGCTTCCGTCACAACAACACAGTAGTTACGATTTATGCTTCTTTGGGAGAGGAAGCTCTTGCTCACTCACTAAATGAGACAGAAGTGACAACAGTGATTTGTGATCGCAAGCAGTTAAAAAAGCTGATTGATACAAGCACACAATTGGATACTGTAAAGCATGTTATTTACATGGAAGACGAGGGCATTACATCCGAGCCATCTCTGTCTGGAGGGAGCAGCAGCTGGACAGTGTCATCTATGTCCAGGGTTGAGCGTTTGGGTCAGGAGAGTCCTGTTGATGCAGATTTGCCGGTAGCTGCTGACATTGCAGTTATAATGTATACAAGTGGCAGTACTGGCTTGCCTAAGGGAGTTATGATGACTCATGGAAATATTGTAGCGACAGTTGCCGCCGTGATGACAATTGTTCCAGGCCTTAGTAACAAAGACATATATCTGGCATACTTGCCGTTAGCTCATATTCTTGAACTAGAAGCTGAGGCTGTAATGGTTGCTTCAGGGATTGCTATTGGTTATGGTTCAACTTTGACACTAACTGATACATCAAGCAAGATTAAAAAAGGAACCAAAGGAGATGCTTCTATGCTGGGTCCAACATTGATGACTGCTGTACCGGCTATTTTAGATCGTGTCAGGGATGGTGTGAGGAATAAGGTTGAGACAACTGGTGGAGTTGCAAAGAAATTGTTTAATATAGCATATAGCCGTAGGTTGGCTGCTATGGAAGGAAGTTGGCTGGGGGCATGGGGTCCAGAGAAGTTTCTCTGGGATGTACTAGTTTTTAAAAAGATACGTGCAGTTCTTGGAGGCCATATCCGTGGTTTACTTTCTGGTGGGGCCCCTCTTTCAGCAGATACACAACGATTCATCAACGTTTGCTTTGGGGCACCAATTGGTCAGGGATATGGTCTCACTGAAACTTGTGCTGGTGCAACCTTTTCTGAATGGGATGATATGACTGTTGGTCGTGTTGGTCCTCCACTTCCCTGTTCCTATGTTAAGCTGATTGATTGGGAAGAAGCTGGGTATTTGACATCAGATTCACCAATGCCACGAGGAGAGATAGTTATTGGTGGTCCCCATGTAACTCTGGGCTATTTCAAGAACAAAGAGAAAACTGATGAGTCCTACAAGGTGGACAAGAGAGGAATGCGATGGTTCTATACTGGTGACATAGGGAGATTTTATCCTGATGGCTGCCTTGAGATTATTGACCGTAAAAAGGACATAGTTAAGCTTCAACATGGAGAATATGTTTCTTTGGGCAAGGTTGAAGCAGCTCTGGCATTGTGCCATTATTTGGACAATATCATGTTACATGCAGATCCATTCCACAGTTATTGTGTGGCTCTTATTGTTCCATCCCATCAAGCCCTTGAAAGTTGGGCTCAGAAAGAAGGAATTGCTTACAAGGATTTTGCAGACCTGTGTCAGAAGAGCGAAGCAATTAAAGAAGTTCAGAGCTCAATTTTACAGGCTGCAAAGGGTGCAAAGCTTGATAAATTTGAAATTCCTTCAAAGATCATGTTACTTCCTGATCCATGGACACCAGAAACTGGTCTTGTGACAGCAGCACTTAAGTTGAAGCGAGAAGTTATAAAGAAGACCTTTGCTGAAGAGCTGAATAAACTGTATAGTTGAGTAGAACTATTGAGCATGGATTATGGCGAGGGATTACTGTCGTTGAATTTGGGGACAACGAAAAAGTTTGAAAAACATGATAAAATTTGTCCGTGCAAGGAGAATTTAGCCCAATGCAGTGGCTAAGATCATACTCGGTAAATGTAGATGGTATTTTAAATGTGCTCTAAAAACACTCTTCGGTGAGGAATTTAACTACGCATTTTCTCCCAGTTGAACTTCTGTTCTCATTTGCCGCTGCTATACTGGCTTTTGTTACAATCAAAGCTAATGATTGCAATGCATGAACATCGATAATTTTGGAATTCCTGCAACGATCAAGATACTTCCTGATCCATGGACACCTGAAACTGGACTTTTGACAGCAGCATTTGAAGCGAAAAGTTATAAAGGCCTTCTCTGAAAAACAATATAAATCGTATGGTTAAATTAAGTGTCTTTAAGCATGGATTATGATGAGGAATTTAGTCCTTGTTAGTCATAGATAGTATTTTAAACATGCTCAAGAACTATTCAGCGAGGAATTGATTAATTCACGTTCTTCTAGCTGTAGTGTCTTTTGTAAATTTTGCTGCTGCTATACTTCCTTTTTATTGTAATCAAATATTGGTATTTCTAATGTTTCTTTTTACCACCTGTTCAGTGAGATATTTAATGACCCGGGAAAACTTTCTTATTTGCTGTAACGTTATTGCCTTGTCATATTATAATAAAAACGAACACCAACAAAAAAAAAAAAAAAAAAAA

Ace file of the UniGene sp_v3.0_unigene34070

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	long chain acyl-CoA synthetase 9 [Arabidopsis thaliana] sp\|Q9CAP8.1\|LACS9_ARATH RecName: Full=Long chain acyl-CoA synthetase 9, chloroplastic gb\|AAG51668.1\|AC010704_12 putative acyl-CoA synthetase; 62297-59022 [Arabidopsis thaliana] gb\|AAM28876.1\|AF503759	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Putative acyl-CoA synthetase	-	-	1.539e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	1.043e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid metabolism	00071		1.043e-16	%
Sma3	Metabolic pathways	01100		1.043e-16	%

Source	Gene names
Sma3	At1g77590; At2g04350; GSVIVT00015387001; GSVIVT00029070001; LACS8; LACS9; LOC_Os11g06880; LOC_Os12g07110; OSJNBa0065C11.10; OSTLU_24496; Os05g0317200; Os11g0169800; Os12g0168700; OsI_19441; OsI_35270; OsI_37613; OsJ_18037; OsJ_33112; OsJ_35359; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-
Sma3	Lipocalin	IPR002345	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77590.1	LACS9 long chain acyl-CoA synthetase 9 chr1:29148501-29151776 REVERSE LENGTH=691	68%
RefSeq	Arabidopsis thaliana	NP_177882.1	long chain acyl-CoA synthetase 9 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002321205.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACR7

Fln msg: Separated hits, possible frame ERROR between 2517 and 2813, your sequence is longer than subject: 833 - 197

Fln protein: MNAYIVGILVPVLLSFVLRNRRKGKVYGVPVDVDGDGGFAIRHHRSSSLVETPWEGASTLADLFEQACKRHAQMRLLGTRKLISREMKVSEDGRSFEKLHLGDYEWLSYGQVLERVCNFASGLVALGHEKGERVAIFAETRAEWFIALQGCFRHNNTVVTIYASLGEEALAHSLNETEVTTVICDRKQLKKLIDTSTQLDTVKHVIYMEDEGITSEPSLSGGSSSWTVSSMSRVERLGQESPVDADLPVAADIAVIMYTSGSTGLPKGVMMTHGNIVATVAAVMTIVPGLSNKDIYLAYLPLAHILELEAEAVMVASGIAIGYGSTLTLTDTSSKIKKGTKGDASMLGPTLMTAVPAILDRVRDGVRNKVETTGGVAKKLFNIAYSRRLAAMEGSWLGAWGPEKFLWDVLVFKKIRAVLGGHIRGLLSGGAPLSADTQRFINVCFGAPIGQGYGLTETCAGATFSEWDDMTVGRVGPPLPCSYVKLIDWEEAGYLTSDSPMPRGEIVIGGPHVTLGYFKNKEKTDESYKVDKRGMRWFYTGDIGRFYPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALALCHYLDNIMLHADPFHSYCVALIVPSHQALESWAQKEGIAYKDFADLCQKSEAIKEVQSSILQAAKGAKLDKFEIPSKIMLLPDPWTPETGLVTAALKLKREVIKKTFAEELNKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIDNFGIPATIKILPDPWTPETGLLTAAFEAKSYKGLL*

Protein Length: 834

Fln nts: ATGGGGGACGCTTCCTTCTTCGATAAATAGATGATTAAAAATAAATGACGTTTTATATGAAACATGACTTTAATTAAAGAAAGGAAAATGAAAGGGGGGCCTTGGCACAAACATCGTAAAATCCGCCCTGTAAATGCTGCATAGCTAACCTGACACTGCTTCGCGCATGTGTGGTATGCATTCTTAGGGTTTGTTTATTCTTCATTCACGTGTTCTGTGAATTCTCTGTAGAGGTATGTTAGCCTCCTTCACCTGGCCGATGAGTCCCGCTACTGAAGATCAGTTGCTTTCGATGAGCAAGGTTTTAAATTTTGCTTAAGTTTCTTAAGTTACTGGCCAGATGCAAGCGACCCAACTGTGCCCTTGTTGCAGTCATCATTAAAAGCAGATTCTCTGGCATCTGTCCAGCAATAAACCCTGTTCACAAAG_-_ATGAATGCCTACATTGTTGGCATCCTTGTGCCTGTGCTGCTATCATTCGTGTTAAGGAACAGAAGAAAGGGAAAGGTATATGGAGTGCCTGTGGATGTGGACGGGGATGGTGGTTTTGCAATCCGACACCATCGCAGTTCTTCCTTAGTTGAAACGCCGTGGGAAGGAGCTTCAACTCTTGCGGACCTCTTTGAGCAAGCATGCAAAAGACATGCACAAATGCGCTTACTCGGAACCCGAAAGCTGATTAGCAGAGAAATGAAAGTCAGTGAAGATGGCAGGAGTTTTGAAAAGCTACATCTGGGAGATTATGAGTGGTTAAGTTATGGGCAAGTACTCGAGCGTGTTTGTAACTTTGCATCAGGTTTGGTAGCACTTGGTCATGAAAAAGGAGAGCGTGTTGCCATTTTTGCTGAAACTCGAGCAGAATGGTTCATTGCCTTGCAAGGTTGCTTCCGTCACAACAACACAGTAGTTACGATTTATGCTTCTTTGGGAGAGGAAGCTCTTGCTCACTCACTAAATGAGACAGAAGTGACAACAGTGATTTGTGATCGCAAGCAGTTAAAAAAGCTGATTGATACAAGCACACAATTGGATACTGTAAAGCATGTTATTTACATGGAAGACGAGGGCATTACATCCGAGCCATCTCTGTCTGGAGGGAGCAGCAGCTGGACAGTGTCATCTATGTCCAGGGTTGAGCGTTTGGGTCAGGAGAGTCCTGTTGATGCAGATTTGCCGGTAGCTGCTGACATTGCAGTTATAATGTATACAAGTGGCAGTACTGGCTTGCCTAAGGGAGTTATGATGACTCATGGAAATATTGTAGCGACAGTTGCCGCCGTGATGACAATTGTTCCAGGCCTTAGTAACAAAGACATATATCTGGCATACTTGCCGTTAGCTCATATTCTTGAACTAGAAGCTGAGGCTGTAATGGTTGCTTCAGGGATTGCTATTGGTTATGGTTCAACTTTGACACTAACTGATACATCAAGCAAGATTAAAAAAGGAACCAAAGGAGATGCTTCTATGCTGGGTCCAACATTGATGACTGCTGTACCGGCTATTTTAGATCGTGTCAGGGATGGTGTGAGGAATAAGGTTGAGACAACTGGTGGAGTTGCAAAGAAATTGTTTAATATAGCATATAGCCGTAGGTTGGCTGCTATGGAAGGAAGTTGGCTGGGGGCATGGGGTCCAGAGAAGTTTCTCTGGGATGTACTAGTTTTTAAAAAGATACGTGCAGTTCTTGGAGGCCATATCCGTGGTTTACTTTCTGGTGGGGCCCCTCTTTCAGCAGATACACAACGATTCATCAACGTTTGCTTTGGGGCACCAATTGGTCAGGGATATGGTCTCACTGAAACTTGTGCTGGTGCAACCTTTTCTGAATGGGATGATATGACTGTTGGTCGTGTTGGTCCTCCACTTCCCTGTTCCTATGTTAAGCTGATTGATTGGGAAGAAGCTGGGTATTTGACATCAGATTCACCAATGCCACGAGGAGAGATAGTTATTGGTGGTCCCCATGTAACTCTGGGCTATTTCAAGAACAAAGAGAAAACTGATGAGTCCTACAAGGTGGACAAGAGAGGAATGCGATGGTTCTATACTGGTGACATAGGGAGATTTTATCCTGATGGCTGCCTTGAGATTATTGACCGTAAAAAGGACATAGTTAAGCTTCAACATGGAGAATATGTTTCTTTGGGCAAGGTTGAAGCAGCTCTGGCATTGTGCCATTATTTGGACAATATCATGTTACATGCAGATCCATTCCACAGTTATTGTGTGGCTCTTATTGTTCCATCCCATCAAGCCCTTGAAAGTTGGGCTCAGAAAGAAGGAATTGCTTACAAGGATTTTGCAGACCTGTGTCAGAAGAGCGAAGCAATTAAAGAAGTTCAGAGCTCAATTTTACAGGCTGCAAAGGGTGCAAAGCTTGATAAATTTGAAATTCCTTCAAAGATCATGTTACTTCCTGATCCATGGACACCAGAAACTGGTCTTGTGACAGCAGCACTTAAGTTGAAGCGAGAAGTTATAAAGAAGACCTTTGCTGAAGAGCTGAATAAACTGTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCATCGATAATTTTGGAATTCCTGCAACGATCAAGATACTTCCTGATCCATGGACACCTGAAACTGGACTTTTGACAGCAGCATTTGAAGCGAAAAGTTATAAAGGCCTTCTCTGA___AAAACAATATAAATCGTATGGTTAAATTAAGTGTCTTTAAGCATGGATTATGATGAGGAATTTAGTCCTTGTTAGTCATAGATAGTATTTTAAACATGCTCAAGAACTATTCAGCGAGGAATTGATTAATTCACGTTCTTCTAGCTGTAGTGTCTTTTGTAAATTTTGCTGCTGCTATACTTCCTTTTTATTGTAATCAAATATTGGTATTTCTAATGTTTCTTTTTACCACCTGTTCAGTGAGATATTTAATGACCCGGGAAAACTTTCTTATTTGCTGTAACGTTATTGCCTTGTCATATTATAATAAAAACGAACACCAACAAAAAAAAAAAAAAAAAAAA

Fln Alignment:

Contig34070___MPRGEIVIGGPHVTLGYFKNKEKTDESYKVDKRGMRWFYTGDIGRFYPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALALCHYLDNIMLHADPFHSYCVALIVPSHQALESWAQKEGIAYKDFADLCQKSEAIKEVQSSILQAAKGAKLDKFEIPSKIMLLPDPWTPETGLVTAALKLKREVIKKTFAEELNKLYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIDNFGIPATIKILPDPWTPETGLLTAAFEAK
D5ACR7_______________MPRGEIVIGGPHVTLGYFKNKEKTDESYKVDERGMRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVCHYLDNFMLHADPFHSYCVALVVPSRQALESWAQKEGIIYKDFSDLCQKSEAIKEVQSSILEVGKSAKLDKFEIPSKIKLLPDPWTPETGLVTAALKLKREVIKKTFAEELNKLYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLDKFEIPSKIKLLPDPWTPETGLVTAALKLK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
199		20		80	0.995493
278			80	20	0.995493
1249	15		84		0.999986
1645		90		10	0.90298
1739		90		10	0.90298
1740	90		10		0.90298
2137	66		33		1.0
2276	75			12	0.975346
2292		90		10	0.90298
2393		11		88	0.923564
2685	10		90		0.90298
3140		13		86	0.999973

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain