SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33321

Length: 1274 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene33321

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable cinnamyl alcohol dehydrogenase 2 n=11 Tax=Pinaceae RepID=CADH2_PICAB	-	-	72%
FL-Next	sp=Probable cinnamyl alcohol dehydrogenase 7/8; Picea abies (Norway spruce) (Picea excelsa).	-	-	81%
Sma3	Cinnamyl alcohol dehydrogenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940		0.0	%
Sma3	Biosynthesis of phenylpropanoids	01061		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	Mannitol dehydrogenase.	EC:1.1.1.255	-	5.184e-38	-

Source	Gene names
Sma3	AT2G21890; AT4G37970; AT4G39330; AT4g37970; At1g72680; At2g21890; At3g19450; At4g34230; At4g37970; At4g37990; At4g39330; AtCAD1; BM1; CAD; CAD1; CAD14; CAD19; CAD2; CAD3; CAD4; CAD5; CAD6; CAD7; CAD8; CADL1; CADL10; CADL11; CADL2; CADL3; CADL4; CADL5; CAD

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	-
Sma3	mannitol dehydrogenase activity	GO:0046029	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34230.1	CAD5, ATCAD5, CAD-5 cinnamyl alcohol dehydrogenase 5 chr4:16386898-16388666 REVERSE LENGTH=357	65%
RefSeq	Arabidopsis thaliana	NP_195149.1	cinnamyl alcohol dehydrogenase 5 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002300211.1	cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q08350

Fln msg: Overlapping hits, possible frame ERROR between 745 and 745,

Fln protein: MGSLESGRRVTGFAAQDSSGHLSPYTYIVRNTGPEDVVIRVIYCGICHTDLHQLRNDYGISHYPMVAGHEAVGIVTEIGNDVKKFKVGEHVGVGCIVGSCRRCHACKDRMEQYCNKRIWNYNDVNPDGTPTRGGFASTMVIDQMFVVRIPENLPLEQAAPLLCAGVTVYSSFKQLGTEAGKRCGILGLGGVGHMGVKIAKAFGLHVTVISSSAKKKEEALEVxxADAYLVSNDGEKMQEAAESLDFILDTIPVSHPLEPYLSLLKMNGKLVILGVVPDPLHFISPLLILGRRSITGSFIGSMEETQEVLDLCAEKKVSCMVEIVGLDYINTAMERLEKNDVRYRFVVDVAASNLDK*

Protein Length: 358

Fln nts: AGTGTTTCTGTTGCCATCCACAACATATACAGTACAGCAGGCAAGCGATCGAATCTAGTTAAGTCATTTTTGAGAG_-_ATGGGAAGCTTGGAATCTGGAAGAAGGGTTACGGGATTTGCAGCTCAGGACTCCAGCGGCCATTTGTCTCCTTACACTTATATTGTCAGAAACACAGGACCTGAAGATGTGGTGATCAGGGTCATTTACTGCGGAATCTGCCACACAGATTTGCATCAACTTCGAAATGACTATGGCATTTCTCATTACCCAATGGTCGCTGGGCATGAAGCGGTGGGAATTGTAACAGAGATTGGTAATGATGTGAAGAAATTCAAAGTGGGAGAACATGTGGGAGTGGGTTGTATTGTTGGGTCCTGTCGCAGGTGCCACGCTTGCAAGGATAGAATGGAACAATACTGTAACAAGAGGATTTGGAACTATAACGATGTGAACCCTGATGGTACTCCTACTCGAGGAGGATTCGCTAGCACCATGGTGATTGATCAGATGTTTGTGGTTAGAATCCCTGAGAATCTACCGCTGGAACAAGCCGCTCCTCTGTTATGTGCAGGGGTTACAGTGTACAGCTCCTTCAAGCAATTGGGCACAGAGGCGGGCAAGAGATGTGGGATTTTGGGTTTGGGAGGCGTGGGGCACATGGGTGTCAAGATTGCCAAAGCCTTCGGCCTTCACGTGACCGTGATCAGTTCGTCTGCTAAGAAGAAAGAAGAAGCTCTAGAAGTTxxxxxxGCGGATGCCTATCTTGTTAGCAACGATGGTGAAAAGATGCAGGAAGCAGCAGAGAGTCTGGATTTTATACTGGACACCATTCCAGTTTCTCATCCTTTGGAACCATATCTTTCCCTTCTAAAGATGAATGGAAAGCTTGTTATTCTGGGCGTGGTGCCAGACCCGTTGCATTTTATTTCTCCTCTTTTGATACTTGGGAGAAGAAGCATAACTGGAAGTTTCATCGGCAGCATGGAGGAAACACAGGAAGTTTTAGATTTATGTGCAGAGAAGAAGGTTTCATGCATGGTTGAGATTGTGGGTCTGGATTATATCAATACAGCCATGGAAAGGCTGGAAAAGAACGATGTTCGTTACAGGTTCGTCGTGGACGTGGCTGCAAGCAATCTTGATAAGTAG___TCATCATAATGCCTGCCTGCAGCAATAGAGTTCTGTTTCTGATCCAGGAATATATAGAAGCAGGATCGAAGCAATCCTGGTTGCTCAGTTTCACTTGTGGGAACTTAAATACCAGATACGGCATTCGC

Fln Alignment:

Contig33321___MGSLESGRRVTGFAAQDSSGHLSPYTYIVRNTGPEDVVIRVIYCGICHTDLHQLRNDYGISHYPMVAGHEAVGIVTEIGNDVKKFKVGEHVGVGCIVGSCRRCHACKDRMEQYCNKRIWNYNDVNPDGTPTRGGFASTMVIDQMFVVRIPENLPLEQAAPLLCAGVTVYSSFKQLG-TEAXXXXXXXXXXXXXXXXXXXAKAFGLHVTVISSSAKKKEEALEVLGADAYLVSNDGEKMQEAAESLDFILDTIPVSHPLEPYLSLLKMNGKLVILGVVPDPLHFISPLLILGRRSITGSFIGSMEETQEVLDLCAEKKVSCMVEIVGLDYINTAMERLEKNDVRYRFVVDVAASNLDK
Q08350_______________MGSLESERTVTGYAARDSSGHLSPYTYTLRNKGPEDVIVRVIYCGICHSDLVQMHNEMGMSNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVAASNLDK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
294	12		87		0.992554
429		33		66	1.0
439		28		71	1.0
459		28	71		1.0
466		28		71	1.0
544	66		33		0.997452
649		33	66		0.997452
651			66	33	0.997452
653	33	66			0.997452
654	66	33			0.997452
656	66			33	0.997452
660		33	66		0.997452
714	33	66			0.997452
944		25		75	0.996473
946			75	25	0.996473
950	75	25			0.996473
951	75	25			0.996473
952			75	25	0.996473
953	75			25	0.996473
954	75		25		0.996473
958	75		25		0.996473
960	75	25			0.996473
964		25	75		0.996473
965	25		75		0.996473
985	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain