SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33223

Length: 763 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene33223 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein S3 [Ostrinia nubilalis]	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	40S ribosomal protein S3	-	-	1.138e-10	-

Source	Gene names
Sma3	AT5G35530; At2g31610; At3g53870; At5g35530; CHLREDRAFT_134051; F5K20_170; GSVIVT00014707001; GSVIVT00016476001; GSVIVT00020378001; GSVIVT00032258001; GSVIVT00032259001; GSVIVT00034104001; LOC_Os03g38000; MICPUCDRAFT_26239; MICPUN_91459; MOK9.14; OSJNBa000

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Ribosomal protein S3, eukaryotic/archaeal	IPR005703	-	-
Sma3		IPR008282	-	-
Sma3	K homology domain-like, alpha/beta	IPR015946	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G35530.1	Ribosomal protein S3 family protein chr5:13710355-13712192 REVERSE LENGTH=248	66%
RefSeq	Arabidopsis thaliana	NP_198403.1	40S ribosomal protein S3-3 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002308530.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	G %	T %	Probability
556	25	75		1.0
568	75	25		1.0
628		28	71	1.0
649	28	71		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
697	708	CTT CTT CTT CTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain