SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene33191

Length: 1038 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene33191

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tau class glutathione S-transferase n=3 Tax=Pinus RepID=Q4PNY9_PINTB	-	-	0.0	80%
FL-Next	tr=Tau class glutathione S-transferase; Pinus densata.	-	-	0.0	82%
Sma3	Glutathione S-transferase GSTU6	-	-	9.3901e-42	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		0.0	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		0.0	%
Sma3	Drug metabolism - cytochrome P450	00982		0.0	%
Sma3	Lactoylglutathione lyase.	EC:4.4.1.5	-	4.951e-20	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyruvate metabolism	00620		4.951e-20	%

Source	Gene names
Sma3	AT1G10360; At1g10360; At1g59670; At1g59700; B1064G04.4; B1144D11.26; Dcarg-1; ERD9; F23H11.1; GST; GST1a; GST1b; GST1c; GST29; GST30; GST30b; GSTU6; GSVIVT00000141001; GSVIVT00000143001; GSVIVT00013910001; GSVIVT00013920001; GSVIVT00022906001; GSVIVT00028

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G10360.1	ATGSTU18, GST29, GSTU18 glutathione S-transferase TAU 18 chr1:3395738-3396806 REVERSE LENGTH=227	0.0	49%
RefSeq	Arabidopsis thaliana	NP_172507.1	glutathione S-transferase TAU 18 [Arabidopsis thaliana]	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4PNZ0

Fln msg:

Fln protein: MATEGEKGQVKLLGVTLSPFVVRVCIALALKGIDYEFIQENLQPKSELLLKSNPVNKKIPVLIHNGKPVCESMIIVQYIEEAWGNKAPNLMPKDPYDQAIARFWAAFVDDKLVPSMRAAFFGQGEQLQKEVEVTVANFVLIEEALRTNECFAGKPYFGGDEMGLIDIALGGLSAFIKGVEKATDSVLIDPEKMPLLSGWMDRFCESDVVKEVMPDPAEYISVRRAMMISPATAN*

Protein Length: 236

Fln nts: ATATCCGAGATAGAAGAGGCAGACTCATAAAACTCCAAATACATTTTCAGTGAA_-_ATGGCAACGGAGGGAGAAAAGGGGCAAGTAAAGCTGCTAGGTGTGACTCTCAGTCCCTTCGTGGTGCGGGTTTGCATTGCTCTGGCCCTTAAAGGTATCGATTACGAATTCATCCAAGAGAATTTGCAGCCTAAAAGTGAGTTGCTGCTGAAATCAAACCCTGTTAACAAGAAGATTCCAGTGCTTATCCACAATGGAAAGCCTGTTTGTGAATCCATGATTATTGTGCAATATATCGAAGAGGCATGGGGCAATAAGGCACCGAATCTTATGCCCAAAGATCCATATGACCAAGCCATTGCTCGCTTCTGGGCTGCCTTTGTAGACGATAAGCTCGTTCCATCTATGCGAGCAGCTTTCTTTGGCCAAGGCGAGCAGCTACAGAAAGAAGTGGAAGTTACCGTTGCAAATTTTGTTTTGATAGAGGAAGCTCTGCGAACCAACGAGTGCTTTGCAGGAAAGCCATATTTTGGAGGGGATGAGATGGGCTTGATTGACATCGCTTTGGGTGGTTTGTCGGCGTTTATCAAAGGCGTCGAGAAGGCTACCGATAGCGTTTTAATAGATCCAGAGAAAATGCCGTTGTTGAGCGGATGGATGGATCGATTCTGTGAATCCGATGTAGTGAAGGAAGTGATGCCAGATCCGGCGGAATATATATCTGTTAGGAGAGCCATGATGATTTCACCAGCTACTGCTAATTAG___GGGAAACCATGCCGACCTTATAAACTGAGGACAGACAGAGAAATTATATTTAAGGGGAGTGCTATTCGTAGTCTTTGTCATTTTAAACTGGTCTTGAAGTATAGCTGCTTTATGTTATTTAGTGTGAATAATGTTTTGGTGAATTTCGCCGGTTCTATAGCTACCATTCCTCTGTTCAATGTATATTATTTATTCGCAGCAAGTTTTTGATGAATCTCTCCTATGCTGTCGCTGGCATCGCCCTATTTTTTCTCCGTGGTAAAAAAAGCGACAATGAAA

Fln Alignment:

Contig33191___MATEGEKGQVKLLGVTLSPFVVRVCIALALKGIDYEFIQENLQPKSELLLKSNPVNKKIPVLIHNGKPVCESMIIVQYIEEAWGNKAPNLMPKDPYDQAIARFWAAFVDDKLVPSMRAAFFGQGEQLQKEVEVTVANFVLIEEALRTNECFAGKPYFGGDEMGLIDIALGGLSAFIKGVEKATDSVLIDPEKMPLLSGWMDRFCESDVVKEVMPDP---AEYISVRRAMMISPATAN
Q4PNZ0_______________MAREGERGQVKLLGATLSPFVVRVRIALALKGIDYEFIQEDLKTKSELLLQSNPVYKQIPVLVHNGKPVCESMIIVQYIEEAWDNKAPNLMPKDPYDRAIARFWAAFIDDKLFPYLRAALFGQGEQLQKAVEDSVTNFLLIEEALRTNRCFAGKAYFGGDEIGLIDIALGGMSTFIKAVEKATDSVLIDPEKMPLLTAWMDRFCKSDGVKEVMPDPVKHAEYLCARRASMVSPPTAN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
249		25		75	0.996473
498		75		25	0.996473
767		75		25	0.996473
768	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain