SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32918

Length: 951 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene32918 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin n=1 Tax=Aureococcus anophagefferens RepID=F0XWQ8_9STRA	-	-	0.0	72%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	91%
Sma3	Polyubiquitin	-	-	1.014e-07	-

Source	Gene names
Sma3	AT5G03240; At1g55060; At2g36170; At3g09790; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_140045; EgUbi; F11F8_38; F8A24.16; FUBI1; GSVIVT00035709001; GSVIVT00037199001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09790.1	UBQ8 ubiquitin 8 chr3:3004111-3006006 REVERSE LENGTH=631	68%
RefSeq	Arabidopsis thaliana	NP_566357.1	polyubiquitin 8 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002305607.1	predicted protein [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure query STOP codon too far from subject stop. Distance to subject end: 75 aas, putative chimeric sequence,

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGxxxxxxxxxxxxxxxxxxxxxxxxxxxxGQDPRQAEIDLCGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGC*

Protein Length: 224

Fln nts: ATGGGGGTGTTTTACAGTACTGGCTGATTTTCTGAACGCGATCGCTGTGCTCTGTTCTGTTTTATTTCCTTCAGGTTTTGTATTGTGTTGATTTCATTTAAAG_-_ATGCAGATATTTGTGAAGACCTTGACCGGTAAGACCATAACACTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGTTGGAAGATGGACGCACTCTCGCCGATTACAACATCCAGAAGGAATCTACTCTTCACCTCGTCCTCCGTCTTAGAGGTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCCAAGATCCAAGACAAGCAGAGATTGATCTTTGCGGGAAGCAACTTGAAGATGGGAGGACTCTGGCGGATTATAACATTCAGAAGGAGTCAACCCTGCATCTTGTCCTTCGGCTCCGTGGTGGTATGCAGATATTTGTGAAAACGTTGACCGGCAAGACGATCACACTGGAGGTTGAGAGCTCGGATACAATTGATAACGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCTCCCGATCAGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAACATCCAGAAAGAGTCTACGCTTCACCTTGTCTTGCGTCTGCGTGGTGGGTGTTGA___AATTCTCAACATCTATTTTCATGAACAGGGTCTAAATGCGAATTTCCTTTAATTCTTAACTTAGCTAGCAGTTAGATGCCGCAATGCCGCGGCATCGTTTATATAGGTTTTAGATGTTATCTTTAGATGTCGTGCATAATGAAGAAGACGACTTTCAATAAAATAAAGCTTTAAAGTTAC

Fln Alignment:

Contig32918___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK-------QRLIFAGSNLKMGxxxxxxxxxxxxxxxxxxxxxxxxxxxGQDPRQAEIDLCGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q7FPA4_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGxxxxxxxxxxxxxxxxxxxxxxxxxxxGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
94	14		85		0.993533
470	66		33		0.997452
811	75		25		0.996473
821		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain