SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32637

Length: 1376 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene32637

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl carrier protein n=1 Tax=Picea sitchensis RepID=B8LRH6_PICSI	-	-	92%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Acyl carrier protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Acyl carrier protein (ACP)	IPR003231	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G47630.1	mtACP3 mitochondrial acyl carrier protein 3 chr5:19306397-19306885 FORWARD LENGTH=131	2.0e-28	46%
RefSeq	Arabidopsis thaliana	NP_199574.1	acyl carrier protein 3 [Arabidopsis thaliana]	3.0e-28	46%
RefSeq	Populus trichocarpa	XP_002308763.1	predicted protein [Populus trichocarpa]	5.0e-35	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRH6

Fln msg:

Fln protein: MQFMRAIVLKHMRIRLGTEYQLLPRHGRIFLPAIKRRFSQEASAQSSPENLSCLKERVMELVKKFDKIDSNKVTETADFQKDLCLDSLDRVELVMAFEQEFLIEIPDEKADKINSCADAIRYIASQPKYNTQGSS*

Protein Length: 137

Fln nts: ATGTTATATTTGGCACGATTTCATAGGTCGAAAACGGGGCATTTTAGTACAGCATCTTCTACCGTCTTTTTGTGTTCGAAATGAAAACCACCAGGAAATTGGACGTGGCAGCCTAAAGACTCCTGCAAGCACACGGGAGATTTCATAAGATAGTAAGCTGTCAATCTGAACTTTCCTCTGGGAGACTTCATAAGATACACAAAGAT_-_ATGCAATTTATGAGGGCTATCGTTTTAAAGCATATGAGGATCAGGCTTGGTACGGAGTATCAGTTGTTGCCAAGGCATGGCAGAATTTTTTTGCCTGCAATCAAAAGGAGATTTTCTCAGGAAGCATCAGCACAAAGTTCTCCTGAGAACCTCAGTTGTCTGAAAGAGAGAGTAATGGAGCTTGTTAAGAAGTTTGACAAGATAGATTCAAACAAGGTTACTGAAACAGCTGATTTTCAAAAGGATTTATGTCTAGACAGCTTAGATCGAGTGGAGTTAGTTATGGCATTTGAGCAAGAATTCTTGATTGAGATTCCAGATGAAAAGGCGGATAAGATCAACTCTTGTGCTGATGCTATAAGATATATTGCATCTCAGCCGAAGTATAATACACAAGGAAGTTCTTAA___CTGTAATGTTGATTTTTACTTTGGGTAGACGCTTAAAGATCTATTTGCAGCCTATTCAGTCTTTTCTGCTTTTCAAGGTCATGCACACAACAAATTTCAAAGTCGATTAGACTTTTATGAGGCTAACAAATTTTTTTCTTTCTAGATATGCTCAGCCTTAGGGTGTTATTACCTCTTAAATTTTAATGTTTGAACAGTTGTATTATTTTGGGCATTTAGCATTTGTTTCAAATGATTCAGTTTCAGATGCATCTCTAATATGTCGTAAGGTTCAACTTGTCTGTTCGATACTAGCCATGTAGTGGAAGGAGGAAGTTTTTCTAAACAATTTAGCCTGGGTAAGCAAGAGCTACCTTTATGGGTGTATTGTAGCTAAAGATTACATTTCAGAGCTTATAGTTGGTGTGGAAAATTATAAGCTCCACTTCTACCAAATTTTGCTTTCGATAAATTTTTACCTCAATAAATCATTGGGATACATATAAAAAAACTTAAATCTTTTGTGCTATTTTGTATAATTGCATTTGATTCATTCACTCCAGTTTTCATCTCTCACAACATGGAGAGAGAAAATGGGGCAGATGCATGGATATTTATTACATCAAATACTCTACTAGCTTTTTGGTGGAGAGAGGGTTGGTGGCACAAATCACTTTTTTTTAAAGAGTTTAAGATAGACATGCCATTTATAGTAAGGTTACACAAGCACTATACTAGTTTTTGGAGCAGAGAGGATTGGTGACGCAAATCAATCTTTCAAGA

Fln Alignment:

Contig32637___MQFMRAIVLKHMRIRLGTEYQLLPRHGRIFLPAIKRRFSQEASAQSSPENLSCLKERVMELVKKFDKIDSNKVTETADFQKDLCLDSLDRVELVMAFEQEFLIEIPDEKADKINSCADAIRYIASQPKYNTQGSS
B8LRH6_______________MQFMRAIVLNHMRIKLGTEYQLLPKHGRILLPAMKKRFSQEASAQSSPENFSFLKERVMELVKKFDKIDSNKVTETADFQKDLCLDSLDRVELVMAFEQEFSIEIPDEKADKINSCADAIRYIASQPKYNVQGSS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
144		85		14	0.999981
157			57	42	1.0
189	15	84			0.999986
198			58	8	1.0
200	58	8			1.0
270		30	70		1.0
342	50		50		1.0
954	54		45		1.0
1066		57		42	1.0
1099	80		20		0.995493
1105	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain