SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32623

Length: 670 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene32623 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S5-1 [Arabidopsis thaliana] ref\|NP_001031502.1\| 40S ribosomal protein S5-1 [Arabidopsis thaliana] sp\|Q9ZUT9.1\|RS51_ARATH RecName: Full=40S ribosomal protein S5-1 gb\|AAC98068.1\| 40S ribosomal protein S5 [Arabidopsis thaliana] gb\|AAL24	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	40S ribosomal protein S5	-	-	2.11e-21	-

Source	Gene names
Sma3	At2g37270; At3g11940; F26K24.23; F3G5.6; GSVIVT00025458001; GSVIVT00026702001; LOC_Os11g29190; MEC18.4; MICPUCDRAFT_48485; MICPUN_90425; OSJNOa264G09.6; OSTLU_12674; Os01g0100700; Os11g0482000; OsI_00008; OsI_36106; OsJ_00007; OsJ_33893; Ot07g00060; P0402

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Metallothionein, family 15, plant	IPR000347	-	-
Sma3	Ribosomal protein S7, eukaryotic/archaeal	IPR005716	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37270.1	ATRPS5B, RPS5B ribosomal protein 5B chr2:15647883-15649042 REVERSE LENGTH=207	79%
RefSeq	Arabidopsis thaliana	NP_001031502.1	40S ribosomal protein S5-1 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002322748.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
235	33		66		0.997452
236	33		66		0.997452
244	33		66		0.997452
247	33		66		0.997452
335	33		66		0.997452
336	33		66		0.997452
441		88		11	0.923564
480	12		87		0.992554
486	12		87		0.992554
495			87	12	0.992554
501		12	87		0.992554
522	14		85		0.993533
540	16		83		0.994512
558		83		16	0.994512
573	83		16		0.994512
585	83		16		0.994512
615	20		80		0.995493
622		20		80	0.995493
623			20	80	0.995493
659	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain