SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32223

Length: 666 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene32223 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gb\|AAD30580.1\|AC007260_11 Similar to SRG1 [Arabidopsis thaliana] gb\|AAK28635.1\|AF360338_1 putative flavanone 3-hydroxylase [Arabidopsis thaliana] gb\|AAK93753.1\| putati	-	-	5.0e-30	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Chromosome undetermined scaffold_186, whole genome shotgun sequence	-	-	6.656e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavonol synthase.	EC:1.14.11.23	-	3.886e-13	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	3.886e-13	%
Sma3	Biosynthesis of phenylpropanoids	01061	3.886e-13	%
Sma3	Metabolic pathways	01100	3.886e-13	%
Sma3	Biosynthesis of secondary metabolites	01110	3.886e-13	%

Source	Gene names
Sma3	At1g15550; At1g17020; At1g78550; At2g36690; F20D23.28; F6I1.30; FLS; GA3ox1; GA3ox2; GA4; GSVIVT00000477001; GSVIVT00000578001; GSVIVT00007225001; GSVIVT00007230001; GSVIVT00007231001; GSVIVT00007234001; GSVIVT00007235001; GSVIVT00007237001; GSVIVT0000723

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	transcription factor binding	GO:0008134	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	gibberellin 3-beta-dioxygenase activity	GO:0016707	Molecular Function	-
Sma3	gibberellin biosynthetic process	GO:0009686	Biological Process	-
Sma3	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	organ senescence	GO:0010260	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G78550.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr1:29545031-29546360 REVERSE LENGTH=356	9.0e-37	45%
RefSeq	Arabidopsis thaliana	NP_177976.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]	1.0e-36	45%
RefSeq	Populus trichocarpa	XP_002323962.1	predicted protein [Populus trichocarpa]	0.0	54%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	Probability
442	33	66		1.0
459		81	18	0.999994
534		14	85	0.993533
538	14	85		0.993533
546		20	80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain