SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32072

Length: 406 nt

UniGene Fasta

>sp_v3.0_unigene32072
CACCCATCGCCAGGCATTGAACCCTGCCACTACTGAGCATCTTCTGTGCCGCTAAATATGGAGAAATCCTCCCCACAGGAGGATAACCATGCCCATACTCCAGAAGAAGTTTGCGGGCAAAAGTGCCGCCAATTTAAGGGAATCCGATTGCGAAAGTGGGGGAGCTGGGTAGCAGAAATTCGAATGCCCAAATCTCGAGAGAAGTTATGGCTGGGGTCATACAGGAGTGCCCAACAGGCCGCCCGCGCCTACGACGTCGCAGTGTATTGTCTGAGAGGGCCGAACGCCAAATTCAATTTACCCAATTCTCTGCCCGAGATTCCGTCTGCGTCTTCTCTTTCCCGCCGGCAGATTCAACTCGCTGCTGCCAAATATGCGCTGGATCAATTCCCTTCGAGTGCGCCCC

Ace file of the UniGene sp_v3.0_unigene32072

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-responsive transcription factor ERF016 n=2 Tax=Arabidopsis RepID=ERF16_ARATH	-	-	6.0e-25	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	RAP2-like protein	-	-	3.808e-19	-

Source	Gene names
Sma3	AP22.2; At1g19210; At1g74930; At2g23340; At3g50260; At4g06746; At4g36900; At5g21960; At5g67190; C-EF3; C-EF8; C7A10.460; DREB33; DREB34; DREB37; DREB38; DREB46; DREB47; ERF007; ERF008; ERF009; ERF010; ERF011; ERF016; ERF017; ERF018; F11C1.100; F15N16.2; F

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G21960.1	Integrase-type DNA-binding superfamily protein chr5:7258560-7259210 REVERSE LENGTH=216	1.0e-32	55%
RefSeq	Arabidopsis thaliana	NP_680184.1	ethylene-responsive transcription factor ERF016 [Arabidopsis thaliana]	2.0e-32	55%
RefSeq	Populus trichocarpa	XP_002324785.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	4.0e-31	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN81

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 116 - 165

Fln protein: MEKSSPQEDNHAHTPEEVCGQKCRQFKGIRLRKWGSWVAEIRMPKSREKLWLGSYRSAQQAARAYDVAVYCLRGPNAKFNLPNSLPEIPSASSLSRRQIQLAAAKYALDQFPSSAP

Protein Length: 117

Fln nts: CACCCATCGCCAGGCATTGAACCCTGCCACTACTGAGCATCTTCTGTGCCGCTAAAT_-_ATGGAGAAATCCTCCCCACAGGAGGATAACCATGCCCATACTCCAGAAGAAGTTTGCGGGCAAAAGTGCCGCCAATTTAAGGGAATCCGATTGCGAAAGTGGGGGAGCTGGGTAGCAGAAATTCGAATGCCCAAATCTCGAGAGAAGTTATGGCTGGGGTCATACAGGAGTGCCCAACAGGCCGCCCGCGCCTACGACGTCGCAGTGTATTGTCTGAGAGGGCCGAACGCCAAATTCAATTTACCCAATTCTCTGCCCGAGATTCCGTCTGCGTCTTCTCTTTCCCGCCGGCAGATTCAACTCGCTGCTGCCAAATATGCGCTGGATCAATTCCCTTCGAGTGCGCCCC

Fln Alignment:

Contig32072___QEDNHAHTPEEVCGQKCRQFKGIRLRKWGSWVAEIRMPKSREKLWLGSYRSAQQAARAYDVAVYCLRGPNAKFNLPNSLPEIPSASSLSRRQIQLAAAKYALDQFPSSAP
B8LN81_______________EHDQTIAPPHEDRGS--RQFKGIRPRKWGIWVSEIRMPRSRQKIWLGSYKTPEQAARAYDAAMYCLRGPNAKFNFPDSVPNIPSASSLSPKQIQHAALKYALGQTPSSLP

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
130	25	75			0.996473
132	75			25	0.996473
199	75		25		0.996473
226	25		75		0.996473
229	25		75		0.996473
230	25			75	0.996473
237	75		25		0.996473
260		25		75	0.996473
293	75		25		0.996473
313		75		25	0.996473
321		25	75		0.996473
325		75	25		0.996473
377	75			25	0.996473
382		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain