SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31998

Length: 245 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene31998
ATCACATTGGAAGTTGAAGGATCTGATTCCATTCAAAATGTTAAGACAAAAAATCCAAGATAAAGAAGGAATCCCTCCAGATCAACAAAGATTGATTTTCGCAGGAAAGCAATTGGAAGACAATAGAACTCTTGCTGACTATAACATCCAAAAAGAATCAACTCTTCACTTGGTATTGAGATTGAGAGGAGGAAATTAAAACATTTAACCAAAATTGAACCTAAAATAAATCATTTTAACCCTAG

Ace file of the UniGene sp_v3.0_unigene31998 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UBiQuitin family member isoform 1 n=1 Tax=Polysphondylium pallidum RepID=D3B469_POLPA	-	-	3.0e-21	90%
FL-Next	sp=Ubiquitin; Avena sativa (Oat).	-	-	0.0	92%
Sma3	Ubiquitin	-	-	5.094e-07	-

Source	Gene names
Sma3	AT5G03240; At1g55060; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; B1472F02.6; CHLREDRAFT_140045; CHLREDRAFT_195594; FUBI1; GSVIVT00006610001; GSVIVT00028185001; GSVIVT00035709001; GUBQ1; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; LOC_Os03g15370;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G52590.1	UBQ1, EMB2167, ERD16, HAP4 ubiquitin extension protein 1 chr3:19505668-19506681 FORWARD LENGTH=128	7.0e-27	92%
RefSeq	Arabidopsis thaliana	NP_566969.1	60S ribosomal protein L40-2 [Arabidopsis thaliana]	9.0e-27	92%
RefSeq	Populus trichocarpa	XP_002333648.1	predicted protein [Populus trichocarpa]	4.0e-27	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P69310

Fln msg: atg_distance in limit (1-15): atg_distance = 13, your sequence is shorter than subject: 54 - 76

Fln protein: MLRQKIQDKEGIPPDQQRLIFAGKQLEDNRTLADYNIQKESTLHLVLRLRGGN*

Protein Length: 55

Fln nts: ATCACATTGGAAGTTGAAGGATCTGATTCCATTCAAA_-_ATGTTAAGACAAAAAATCCAAGATAAAGAAGGAATCCCTCCAGATCAACAAAGATTGATTTTCGCAGGAAAGCAATTGGAAGACAATAGAACTCTTGCTGACTATAACATCCAAAAAGAATCAACTCTTCACTTGGTATTGAGATTGAGAGGAGGAAATTAA___AACATTTAACCAAAATTGAACCTAAAATAAATCATTTTAACCCTAG

Fln Alignment:

Contig31998___LRQKIQDKEGIPPDQQRLIFAGKQLEDNRTLADYNIQKESTLHLVLRLRGG
P69310_______________VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
149	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain