SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31872

Length: 833 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene31872

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00847, AP2, AP2 domain	-	-	5.0e-10	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	RAP2-like protein	-	-	1.119e-24	-

Source	Gene names
Sma3	AP22.2; At1g19210; At1g74930; At1g77640; At2g23340; At3g50260; At4g36900; At5g21960; At5g67190; B1172G12.14; B1172G12.5; B1172G12.8; C-EF5; C-EF8; C7A10.460; DREB1; DREB2; DREB32; DREB33; DREB34; DREB36; DREB37; DREB38; DREB42; DREB44; DREB45; DREB46; DRE

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR001476	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G21960.1	Integrase-type DNA-binding superfamily protein chr5:7258560-7259210 REVERSE LENGTH=216	7.0e-31	60%
RefSeq	Arabidopsis thaliana	NP_680184.1	ethylene-responsive transcription factor ERF016 [Arabidopsis thaliana]	1.0e-30	60%
RefSeq	Populus trichocarpa	XP_002308508.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	4.0e-33	59%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
2	66			33	0.997452
38	66		33		0.997452
43	66		33		0.997452
55		66	33		0.997452
101	50		50		1.0
108	25		75		0.996473
142	75	25			0.996473
143	25	75			0.996473
148		75		25	0.996473
172			66	33	0.997452
390		80	20		0.995493
476			66	33	0.997452
482	33			66	0.997452
488	66	33			0.997452
495	33	66			0.997452
496	33		66		0.997452
566	16		83		0.994512
644		33	66		1.0
662	83			16	0.994512
678		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain