SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31824

Length: 1704 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene31824

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	non-specific phospholipase C6 [Arabidopsis thaliana] dbj\|BAC22511.1\| phosphatidylglycerol specific phospholipase C [Arabidopsis thaliana] gb\|AEE78437.1\| non-specific phospholipase C6 [Arabidopsis thaliana]	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Phosphatidylglycerol specific phospholipase C	-	-	1.957e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase C.	EC:3.1.4.3	-	3.818e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Inositol phosphate metabolism	00562	3.818e-08	%
Sma3	Glycerophospholipid metabolism	00564	3.818e-08	%
Sma3	Ether lipid metabolism	00565	3.818e-08	%
Sma3	Metabolic pathways	01100	3.818e-08	%

Source	Gene names
Sma3	At1g07230; At2g26870; At3g03520; At3g03530; At3g03540; At3g48610; B1139B11.14-1; F10K1.6; GSVIVT00000809001; GSVIVT00000811001; GSVIVT00017959001; GSVIVT00022270001; GSVIVT00024115001; LOC_Os03g61130; LOC_Os03g63580; LOC_Os11g38050; LOC_Os11g38060; OJ1111

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	ammonium transmembrane transporter activity	GO:0008519	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	glycolipid biosynthetic process	GO:0009247	Biological Process	-
Sma3	phospholipid catabolic process	GO:0009395	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ammonium transporter	IPR001905	-	-
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Phosphoesterase	IPR007312	-	-
Sma3		IPR010256	-	-
Sma3	Ammonium transporter, conserved site	IPR018047	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G48610.1	NPC6 non-specific phospholipase C6 chr3:18011653-18013959 REVERSE LENGTH=520	68%
RefSeq	Arabidopsis thaliana	NP_190430.2	non-specific phospholipase C6 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002318737.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVL9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 482 - 503

Fln protein: VYITPLN*WNKEQISLLNLTKTYILHLSSFEHQTS*K*THLPHTHSQPLMLCYVDTCELKFTSLFLTILNNVNN*MKRFTKQQFIYQCLLLWFPWLSIIRPEAIPVYSTLVQEFAVFDRWFSSLPGPTQPNRLFVYSGTSHGATHHDPKQLAKGYPQKTIFQSLEDSGFSFGIYYHSIPTTLFYRDLRKLKYISRFHRFSKKFKRHARAGGLPNVVVIEPRYFHLADSPANDDHPSHDVSSGQNLVKEVYEALRASPQWNQTLLLITYDEHGGFYDHVPTPVRNVPSPDGIVGSPPYFFNFDRLGVRVPTIMVSPWINKGTVVHRPSGPSPSSEFEHSSIPATIKKMFNLSANFLTHRDAWAGTFEGVVSLRDSPRTDCPEVLPDVQQGTARKLTSGDEALSEFQQEVVQLAAVLNGDHSLNSFPDEGMFGKSMKVKQAAQYVEKGMARFTEASIDALKLGASDFAIVHMKPSLTSRKTNP*

Protein Length: 483

Fln nts: GTATATATAACACCTCTTAATTAGTGGAACAAGGAACAAATTTCATTACTCAATTTAACCAAAACATACATACTACACCTCTCAAGTTTTGAACATCAAACCTCCTAAAAATAAACACATCTCCCCCACACCCACTCACAGCCACTCATGCTATGTTATGTAGATACATGTGAATTAAAATTTACATCTCTATTCTTAACGATTTTGAATAATGTAAACAATTGAATGAAAAGATTCACTAAACAGCAGTTCATATATCAATGTCTTCTTTTGTGGTTTCCTTGGCTGTCGATCATTAGGCCGGAGGCGATCCCCGTGTATAGCACTCTTGTACAGGAGTTCGCAGTATTCGATCGCTGGTTCTCATCGTTGCCAGGCCCTACGCAACCCAACAGGTTGTTCGTTTATTCCGGAACCTCCCACGGAGCCACGCACCACGATCCGAAGCAACTGGCGAAAGGGTATCCTCAGAAGACCATCTTCCAGTCCCTGGAAGACTCGGGGTTCTCATTTGGCATCTATTACCACAGCATTCCCACTACACTTTTCTACAGAGACCTTCGTAAGCTCAAGTACATTTCCAGGTTTCATCGGTTTAGTAAAAAATTCAAGCGCCATGCCAGAGCAGGGGGGCTGCCAAATGTTGTGGTCATAGAGCCACGCTACTTCCATCTCGCGGATTCGCCTGCAAACGATGACCATCCTTCTCATGATGTTTCCAGCGGGCAGAATCTGGTAAAGGAAGTTTACGAGGCGCTGAGAGCAAGCCCCCAGTGGAACCAAACCCTGCTGCTCATTACATACGATGAACACGGCGGTTTCTACGATCATGTGCCCACGCCAGTTCGCAATGTCCCCAGCCCCGACGGCATTGTGGGATCCCCTCCCTATTTTTTCAATTTTGACAGATTAGGCGTACGCGTTCCCACTATAATGGTGTCCCCTTGGATCAACAAAGGAACAGTGGTGCACCGCCCTAGCGGGCCATCGCCGAGCTCAGAGTTCGAGCATTCATCGATTCCTGCAACTATCAAGAAAATGTTCAATCTCTCTGCCAATTTTCTCACTCACAGAGATGCCTGGGCTGGAACTTTCGAAGGCGTGGTGAGCTTGCGGGATAGTCCACGGACTGATTGCCCAGAGGTGTTGCCGGATGTACAGCAAGGAACTGCCAGGAAGTTGACATCGGGTGATGAAGCACTGAGCGAGTTTCAGCAGGAGGTAGTTCAGTTGGCTGCAGTTCTGAACGGAGATCATTCGCTGAACAGTTTTCCAGACGAGGGAATGTTTGGGAAGTCGATGAAGGTGAAGCAAGCAGCGCAGTATGTTGAGAAGGGCATGGCACGCTTCACGGAGGCAAGTATAGATGCCTTAAAACTCGGGGCATCAGATTTTGCCATCGTCCATATGAAACCTTCGCTCACATCCAGAAAAACCAACCCCTGA___TATGTAACGCTGCTTTACTTATCAAGAAATGGTGTTAATTGCTGAAGCCCTTCATAGGTACTTGCAGCGAATTTCTGCCCATGTGTATGGCCTCTGTATTTCTAACATGTTTCTTTAAATGGAGTGTAAATTTCTGCGCAGGTGTTTGGCCTTTGTATTTTTGAGACAGAGATACATGGAGTGTAAATTTCTGCCCAGGTGTTTGGCCTTTGTATTTTTTAGACAAAGATACCATGAAAATTTATGTGACGTATTTTT

Fln Alignment:

Contig31824___RPEAIPVYSTLVQEFAVFDRWFSSLPGPTQPNRLFVYSGTSHGATHHDPKQLAKGYPQKTIFQSLEDSGFSFGIYYHSIPTTLFYRDLRKLKYISRFHRFSKKFKRHARAGGLPNVVVIEPRYFHLADSPANDDHPSHDVSSGQNLVKEVYEALRASPQWNQTLLLITYDEHGGFYDHVPTPVRNVPSPDGIVGSPPYFFNFDRLGVRVPTIMVSPWINKGTVVHRPSGPSPSSEFEHSSIPATIKKMFNLSANFLTHRDAWAGTFEGVVSLRDSPRTDCPEVLPDVQQGTARKLTSGDEA-LSEFQQEVVQLAAVLNGDHSLNSFPDEGMFGKSMKVKQAAQYVEKGMARFTEASIDALKLGASDFAIVHMKPSLTSRKTN
A9NVL9_______________RPEVVPVYNTLVNEFAVFDRWFASVPASTQPNRLYVHSATSHGATSNIPKLLADGYPQKTIFESIDESGLSFGIYYEDIPATMFYRNLRKLKYIGKFRSYSTEFKLHAKQGKLPNYVVVEQRYTDTKLLPANDDHPSHDVAEGQKFVKEVYETLRSSPQWNQTLFLITYDEHGGFFDHVPTPVKDVPSPDDIVGPDPFFFKFDRLGVRVPTIMISPWIDKGTVIHGPNGPYPSSQFEHSSIAATVKKLFNLKSDFLTKRDAWAGTFEDVVQKRSSPRTDCPETLADPPK--IRKSEANEEAKISEFQEELVQLAAQLNGDYTLKSYPEE--IGKKMNVREAKKYMGDSVRRFFEAGRLAKRLGADDHEIVKMRPSLTTRSTS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
661	75	25			1.0
709			14	85	0.993533
745	85		14		0.993533
768		28	71		1.0
1476	80	20			0.995493
1499		14		85	0.993533
1513	85		14		0.993533
1516	14		85		0.993533
1519	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain