SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31740

Length: 2307 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene31740
CTACTTAGGTATGATAGGCTCTCACGTTTTCTCATACCATCTCAATAATCCAAAATTATAATGTCCTACATCAGATGCGATTCATTAGACACACACCACAAAGCACGTTATTCCCAGCTGAGGAAAGGTCGTCAGCAGTTTTTTGGGAATAAGCGAAGGGTATGTTAATTAATACAGGGAGGGCAGGGTTATGTAAAACCTCCGACGTGGTTGGAAAAAGCAGGCTCTTCAATCTTCTGAGAACCCGCGAGGAGAAGGGAGGGGGAGCCAGATGGCGAGCTTTCTGAATTCTTTTTTGTACGGAATGTATGGATTGGGAGGTGTCCTCTGCACTTGCATTGCGCTGCTGGTGGCGTTTCAGGAGAAATTGGTGTACGTTCCTGTGGTTCCCGGCATGACCAAGGGCTACCCAATCACCCCTGCCAGACTTCGCCTCACATATGAGGACGTATGGCTTACATCGGCGGATGGAATCCGGCTTCATGCCTGGTTCATCAAGCTTCTCCCCGAATGCAGAGGTCCAACAATTTTGTTTCTCCAAGAAAATGCTGGCAATATAGCTCACCGACTAGAGTTCATTCGCATTATGTTACAGAAATTGAAATGCAATGTTTTTATGCTTTCTTACCGAGGATATGGAGCAAGTGATGGAAACCCATCACAACATGGTATTACCAAAGATGCAGAAGCAGCATTACAACATCTGCTCCAAAGGACTGACATTGATACATCAAGAATAGTCGTGTTTGGGAGATCTTTGGGAGGAGCTGTTGGAGCAGCACTTGCCAAAAATAATCCTGAAAAGGTTTCTGCATTGATTCTCGAGAATACTTTTACATCTGTGTTGGACATGGCTGGAGTTTTGTTACCTTTTCTTAAGTGGTTTATAGGAGGCACTGATTCCAAGGGTCCAAGGATTTTAAATTGTCTGGTTCGCTCTCCATGGAATACTATTGATCTTATAGATCAGGTCGAACAACCAATTTTATTCCTATCTGGCTCTCGGGATGAGATGGTTCCACCTTCACACATGCGCAGGCTATATGAAAAAGCTAAACGGAATCTAAGGTGCTTCTTTGTAGAGTTCCCAACAGGTATGCATATGGATACTTGGTGTGTTGGTGGGGATCGATATTGGCAAACAATACATCATTTCCTGGTGAGAGAACTTTCAAATCGTGAAGGAAATGAAGAAGGCTCAAGAGATGGCTGGGAAAATGAGTGGGGCAACCAGTGAAATGTTGAAAAATTGGAAAAGCTTGTTGTATCATCTGGCTAAAGCATCAGGCTTTATGTACATTAATTTTTCTTGGATATCACTTTATGTTCTCGAGTTTATGTATTCTAAATTTATTCTTGGTGAGCTTCCTAGTAACAATGAATCTGCGTCTTGTTGTCATTGCTGCAGTGCTCTTCTAGGTTTTAAATGGAAATTAATCCATGTTGCGACATTCTGAAAATTATTATTCATCTTTAACTAGTATGGCAGAACATTACTTGCTTGGTCTGGGAAAGTTTCCACTATGTGCTCTGGATATCATCTTCATGGATGCCTTGGGGACATGGATTTTTCATGATGTTGAACACCAAATGTATTTGAAATTACATTTTGATTTTACACTAAATTACGTAGTCGCTACAGCAGCAGGGCGTCAGATTTATCTTGCTATATCTTCTGACTAATTTCTTGGCTGTCTCTAGTTACTTTCAATGGGAGGCTGTCATTTCCAAGAAGATATGGGTAATTGAGTTTTCTGGGAAAGCACGCATTTGGAATTCTAAGAGTTCAGGGCAGAGACAAATGGTGAAATTTATTTTTAGGTTTGTTAAACATGTTCAAAGCATATGTTTGTTTTTAAGACTCAGCAACGGATGTACCGAAAAAGAAGATGACTGATTGAAGAAATTCAAATGCTACGGTGTTTGCTGACATGGTTTGTTTGTATTATGCAGGAGAAAAGTTTAGTTAGTAGAGTTTAATCCTCCTTGGTACTAGCGTTGTGAAATTCTTATATGAACTGCAAATATTTCGCGAATGGATTGTTGTGTTTTATTAGTTACCCCGGAACTATTGATTAGTGTTAGGGACATGTGAGTTGAATGATTCTATGGAACATTGTGACTTGCATCGATTCTCAACATATAAAAGGGCTACAAACAGGTTCCTTCATATGATGAAAATATGCTAGTTTTTCTGTCCTGTCCTCTCTTTTAATTTGTTTATCGATGTTTAGTGGTCGTGATTTCCTTTCTGTATGTGCAGTGGGATTCACTGGACACACCAGAATGAATTTAATAGAAGTTGGA

Ace file of the UniGene sp_v3.0_unigene31740 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	abhydrolase domain-containing protein 13 [Danio rerio] sp\|Q32LS6.1\|ABHDD_DANRE RecName: Full=Abhydrolase domain-containing protein 13 gb\|AAI09446.1\| Zgc:123286 [Danio rerio]	-	-	2.8026e-45	36%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	72%

Source	Gene names
Sma3	At5g20520; CHLREDRAFT_192294; GSVIVT00016487001; OSJNBa0072I06.36; Os07g0608300; OsI_26818; OsJ_25069; PHYPADRAFT_214723; POPTRDRAFT_1105469; POPTRDRAFT_416726; RCOM_1046060; VITISV_000762; WAV2;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	organelle inner membrane	GO:0019866	Cellular Component	-
Sma3	root development	GO:0048364	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20520.1	WAV2 alpha/beta-Hydrolases superfamily protein chr5:6943536-6946315 REVERSE LENGTH=308	72%
RefSeq	Arabidopsis thaliana	NP_568395.1	protein wavy growth 2 / esterase-lipase domain-containing protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002324715.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9INA7

Fln msg:

Fln protein: MASFLNSFLYGMYGLGGVLCTCIALLVAFQEKLVYVPVVPGMTKGYPITPARLRLTYEDVWLTSADGIRLHAWFIKLLPECRGPTILFLQENAGNIAHRLEFIRIMLQKLKCNVFMLSYRGYGASDGNPSQHGITKDAEAALQHLLQRTDIDTSRIVVFGRSLGGAVGAALAKNNPEKVSALILENTFTSVLDMAGVLLPFLKWFIGGTDSKGPRILNCLVRSPWNTIDLIDQVEQPILFLSGSRDEMVPPSHMRRLYEKAKRNLRCFFVEFPTGMHMDTWCVGGDRYWQTIHHFLVRELSNREGNEEGSRDGWENEWGNQ*

Protein Length: 323

Fln nts: CTACTTAGGTATGATAGGCTCTCACGTTTTCTCATACCATCTCAATAATCCAAAATTATAATGTCCTACATCAGATGCGATTCATTAGACACACACCACAAAGCACGTTATTCCCAGCTGAGGAAAGGTCGTCAGCAGTTTTTTGGGAATAAGCGAAGGGTATGTTAATTAATACAGGGAGGGCAGGGTTATGTAAAACCTCCGACGTGGTTGGAAAAAGCAGGCTCTTCAATCTTCTGAGAACCCGCGAGGAGAAGGGAGGGGGAGCCAG_-_ATGGCGAGCTTTCTGAATTCTTTTTTGTACGGAATGTATGGATTGGGAGGTGTCCTCTGCACTTGCATTGCGCTGCTGGTGGCGTTTCAGGAGAAATTGGTGTACGTTCCTGTGGTTCCCGGCATGACCAAGGGCTACCCAATCACCCCTGCCAGACTTCGCCTCACATATGAGGACGTATGGCTTACATCGGCGGATGGAATCCGGCTTCATGCCTGGTTCATCAAGCTTCTCCCCGAATGCAGAGGTCCAACAATTTTGTTTCTCCAAGAAAATGCTGGCAATATAGCTCACCGACTAGAGTTCATTCGCATTATGTTACAGAAATTGAAATGCAATGTTTTTATGCTTTCTTACCGAGGATATGGAGCAAGTGATGGAAACCCATCACAACATGGTATTACCAAAGATGCAGAAGCAGCATTACAACATCTGCTCCAAAGGACTGACATTGATACATCAAGAATAGTCGTGTTTGGGAGATCTTTGGGAGGAGCTGTTGGAGCAGCACTTGCCAAAAATAATCCTGAAAAGGTTTCTGCATTGATTCTCGAGAATACTTTTACATCTGTGTTGGACATGGCTGGAGTTTTGTTACCTTTTCTTAAGTGGTTTATAGGAGGCACTGATTCCAAGGGTCCAAGGATTTTAAATTGTCTGGTTCGCTCTCCATGGAATACTATTGATCTTATAGATCAGGTCGAACAACCAATTTTATTCCTATCTGGCTCTCGGGATGAGATGGTTCCACCTTCACACATGCGCAGGCTATATGAAAAAGCTAAACGGAATCTAAGGTGCTTCTTTGTAGAGTTCCCAACAGGTATGCATATGGATACTTGGTGTGTTGGTGGGGATCGATATTGGCAAACAATACATCATTTCCTGGTGAGAGAACTTTCAAATCGTGAAGGAAATGAAGAAGGCTCAAGAGATGGCTGGGAAAATGAGTGGGGCAACCAGTGA___AATGTTGAAAAATTGGAAAAGCTTGTTGTATCATCTGGCTAAAGCATCAGGCTTTATGTACATTAATTTTTCTTGGATATCACTTTATGTTCTCGAGTTTATGTATTCTAAATTTATTCTTGGTGAGCTTCCTAGTAACAATGAATCTGCGTCTTGTTGTCATTGCTGCAGTGCTCTTCTAGGTTTTAAATGGAAATTAATCCATGTTGCGACATTCTGAAAATTATTATTCATCTTTAACTAGTATGGCAGAACATTACTTGCTTGGTCTGGGAAAGTTTCCACTATGTGCTCTGGATATCATCTTCATGGATGCCTTGGGGACATGGATTTTTCATGATGTTGAACACCAAATGTATTTGAAATTACATTTTGATTTTACACTAAATTACGTAGTCGCTACAGCAGCAGGGCGTCAGATTTATCTTGCTATATCTTCTGACTAATTTCTTGGCTGTCTCTAGTTACTTTCAATGGGAGGCTGTCATTTCCAAGAAGATATGGGTAATTGAGTTTTCTGGGAAAGCACGCATTTGGAATTCTAAGAGTTCAGGGCAGAGACAAATGGTGAAATTTATTTTTAGGTTTGTTAAACATGTTCAAAGCATATGTTTGTTTTTAAGACTCAGCAACGGATGTACCGAAAAAGAAGATGACTGATTGAAGAAATTCAAATGCTACGGTGTTTGCTGACATGGTTTGTTTGTATTATGCAGGAGAAAAGTTTAGTTAGTAGAGTTTAATCCTCCTTGGTACTAGCGTTGTGAAATTCTTATATGAACTGCAAATATTTCGCGAATGGATTGTTGTGTTTTATTAGTTACCCCGGAACTATTGATTAGTGTTAGGGACATGTGAGTTGAATGATTCTATGGAACATTGTGACTTGCATCGATTCTCAACATATAAAAGGGCTACAAACAGGTTCCTTCATATGATGAAAATATGCTAGTTTTTCTGTCCTGTCCTCTCTTTTAATTTGTTTATCGATGTTTAGTGGTCGTGATTTCCTTTCTGTATGTGCAGTGGGATTCACTGGACACACCAGAATGAATTTAATAGAAGTTGGA

Fln Alignment:

Contig31740___MASFLNSFLYGMYGLGGVLCTCIALLVAFQEKLVYVPVVPGMTKGYPITPARLRLTYEDVWLTSADGIRLHAWFIKLLPECRGPTILFLQENAGNIAHRLEFIRIMLQKLKCNVFMLSYRGYGASDGNPSQHGITKDAEAALQHLLQRTDIDTSRIVVFGRSLGGAVGAALAKNNPEKVSALILENTFTSVLDMAGVLLPFLKWFIGGTDSKGPRILNCLVRSPWNTIDLIDQVEQPILFLSGSRDEMVPPSHMRRLYEK-AKRNLRCFFVEFPTGMHMDTWCVGGDRYWQTIHHFL---VRELSNREGNEEGSRDGWEN
B9INA7_______________MVSYVSAFLYGV---GGIVVAGMALLVAFQEKLVYVPVLPGLTKSYSITPARLRLLYEDVWLRSSDGVRLHAWFIKLLPECRGPTVLFFQENAGNIAHRLEMVRIMIQRLQCNVFMLSYRGYGASDGYPSQHGIAKDAQAALDHLSQRTDIDTSRIVVFGRSLGGAVGALLTKNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGGTGSKGPKILNFLVRSPWSTIDIVGQINQPILFLSGLQDEMVPPSHMQMLYAKVASHNRECIFVEFPNGMHMDTWLAGGDHYWRTIQQFIGNHVPEIKEHESSHDDKGDSFSS

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
350			20	80	0.995493
516		20		80	0.995493
613	88			11	0.923564
621	88	11			0.923564
625	88			11	0.923564
626	88	11			0.923564
628		11		88	0.923564
629			11	88	0.923564
661	12		87		0.992554
868	90	10			0.90298
1015		12		87	0.992554
1036		12	87		0.992554
1040			87	12	0.992554
1137		20		80	0.995493
1138		20		80	0.995493
1139		16	83		0.994512
1141	83			16	0.994512
1196		80		20	0.999996
1239	90		10		0.90298
1462	14		85		0.993533
1471	85		14		0.993533
1477	85	14			0.993533
1478	85	14			0.993533
1479	85	14			0.993533
1508		16		83	0.994512
1509		16		66	0.988813
1510	16			83	0.994512
1522		12		87	0.992554
2027	81		18		0.999994
2043	10		90		0.90298
2092	12	50	12	12	0.965021
2093		57	14		1.0
2094		28		71	1.0
2095	14	28		57	1.0
2096	28	14		57	1.0
2097	14			85	0.993533
2098			20	80	0.995493
2103		80		20	0.995493
2108	20			80	0.995493
2114		25	75		0.996473
2115		25		75	0.996473
2116		25		75	0.996473
2117	25			75	0.996473
2228	83	16			0.994512
2229		16		83	0.994512
2230		16	83		0.994512
2231	83	16			0.994512
2238		20		80	0.995493
2240		20		80	0.995493
2241		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain