SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene31622

Length: 516 nt

UniGene Fasta

>sp_v3.0_unigene31622
AACGTCGTCAGTTAGCACAGATATTCAGTTGCAATAGTGCAGACGCAGCTCTATGCGTTCCGAGTTCATAGCCTCACTTACTCGTTTTAAAGATTTCAAGCTTCGTAAGCACTTCGTGAGTTCGACTCCCGCATACCCTGCAACGACCTGCCATGGCTAAACCCTTGCAAAACCAGAACGATCACAACAGACGCGAGGACCGGTCACTAAAGTCGCGGCAGTTGAAGGGAATCCGAATGAGAAAATGGGGGAAATGGGTCTCCGAAATTCGAATGCCCAAATGTACGGGCAGAATTTGGCTCGGCTCCTACGACACCCCGGAAAAGGCTGCCCGCGCTTACGATTTTGCAGCGTATTGCCTGAGAGGAGCGAAAGCCAAACTCAATTTTCCCCTCTCCCCGCCGGAAATCCCCTGCGCCTCTTCTCTATCGCCGCCTCAAATTCAAGTCTTTGCCGCCAGGTTCGCCGCGGAAGAATTGCAGGTGCCTTCTGAAACGGCATTTTCATCCTCTCGGG

Ace file of the UniGene sp_v3.0_unigene31622

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L0Z0_MALDO	-	-	5.0e-28	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	AP2/ERF domain-containing transcription factor	-	-	0.0	-

Source	Gene names
Sma3	AP22.2; At1g01250; At1g19210; At1g74930; At1g77640; At2g23340; At2g36450; At3g50260; At4g06746; At4g31060; At4g36900; At5g21960; At5g67190; B1015E06.11; B1172G12.12; B1172G12.8; C-EF3; C-EF4; C-EF8; C7A10.460; CBF7; DBP; DREB; DREB1; DREB2; DREB32; DREB33

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	YbaK/aminoacyl-tRNA synthetase-associated domain	IPR007214	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G21960.1	Integrase-type DNA-binding superfamily protein chr5:7258560-7259210 REVERSE LENGTH=216	2.0e-34	61%
RefSeq	Arabidopsis thaliana	NP_680184.1	ethylene-responsive transcription factor ERF016 [Arabidopsis thaliana]	3.0e-34	61%
RefSeq	Populus trichocarpa	XP_002308508.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	3.0e-34	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQM1

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 121 - 177

Fln protein: MAKPLQNQNDHNRREDRSLKSRQLKGIRMRKWGKWVSEIRMPKCTGRIWLGSYDTPEKAARAYDFAAYCLRGAKAKLNFPLSPPEIPCASSLSPPQIQVFAARFAAEELQVPSETAFSSSR

Protein Length: 122

Fln nts: AACGTCGTCAGTTAGCACAGATATTCAGTTGCAATAGTGCAGACGCAGCTCTATGCGTTCCGAGTTCATAGCCTCACTTACTCGTTTTAAAGATTTCAAGCTTCGTAAGCACTTCGTGAGTTCGACTCCCGCATACCCTGCAACGACCTGCC_-_ATGGCTAAACCCTTGCAAAACCAGAACGATCACAACAGACGCGAGGACCGGTCACTAAAGTCGCGGCAGTTGAAGGGAATCCGAATGAGAAAATGGGGGAAATGGGTCTCCGAAATTCGAATGCCCAAATGTACGGGCAGAATTTGGCTCGGCTCCTACGACACCCCGGAAAAGGCTGCCCGCGCTTACGATTTTGCAGCGTATTGCCTGAGAGGAGCGAAAGCCAAACTCAATTTTCCCCTCTCCCCGCCGGAAATCCCCTGCGCCTCTTCTCTATCGCCGCCTCAAATTCAAGTCTTTGCCGCCAGGTTCGCCGCGGAAGAATTGCAGGTGCCTTCTGAAACGGCATTTTCATCCTCTCGGG

Fln Alignment:

Contig31622___MAKPLQNQNDHNRREDRSLKSRQLKGIRMRKWGKWVSEIRMPKCTGRIWLGSYDTPEKAARAYDFAAYCLRGAKAKLNFPLSPPEIPCASSLSPPQIQVFAARFAAEELQVPSE
A9NQM1_______________MTKPSPNQNSHSRPETRSLKSRQFKGIRMRKWGKWVSEIRMPYCTGRIWLGSYDTPEKAARAYDFAAFCLRGSKAKLNFPLFTPKIPCASSLSPQQIQAAAAKFAAEEFELPSE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
18	25	75			0.996473
116		25		75	0.996473
231	33		66		0.997452
372			50	50	1.0
380		50	50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain