SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30734

Length: 1013 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene30734

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	flowering locus T like protein [Populus nigra] dbj\|BAD27481.1\| flowering locus T like protein [Populus nigra]	-	-	0.0	66%
FL-Next	tr=Flowering locus T/Terminal flower1-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	68%
Sma3	Flowering locus T	-	-	4.59e-26	-

Source	Gene names
Sma3	ATC; At1g65480; At2g27550; At5g03840; At5g62040; BFT; BNTFL1-1; BNTFL1-2; BNTFL1-3; BOTFL1-1; BOTFL1-2; BRTFL1-1; BRTFL1-2; CEN; CET1; CET2; CET4; CET5; CiFT; CiFT2; CiFT3; CoTFL1-1; CoTFL1-2; CsFT; CsTFL1-1; CsTFL1-2; CsTFL1LC2; CsTFL1a; CsTFL1b; CsTFL1d

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	vesicle	GO:0031982	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein targeting to vacuole	GO:0006623	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	inflorescence development	GO:0010229	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-
Sma3	short-day photoperiodism	GO:0048572	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidylethanolamine-binding, conserved site	IPR001858	-	0.0	-
Sma3	Phosphatidylethanolamine-binding protein PEBP	IPR008914	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03840.1	TFL1, TFL-1 PEBP (phosphatidylethanolamine-binding protein) family protein chr5:1024760-1025796 REVERSE LENGTH=177	61%
RefSeq	Arabidopsis thaliana	NP_196004.1	protein TERMINAL FLOWER 1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002321903.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
120		46		53	1.0
201		11	88		0.999952
206	11		88		0.999952
296		83		16	0.999991
383			12	87	0.992554
464		33		66	1.0
573			20	80	0.995493
576	80	20			0.995493
657			42	57	1.0
685	14		85		0.993533
689		85		14	0.993533
691		14		85	0.993533
702		85		14	0.993533
706	14		85		0.993533
710		14	85		0.993533
737		11		88	0.923564
782		66		33	1.0
808		66		33	1.0
843	90	10			0.90298
846		11		88	0.923564
849			87	12	0.992554
868		12		87	0.992554
873	20			80	0.995493
961	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain