SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30704

Length: 1030 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene30704

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase prx12 n=1 Tax=Spinacia oleracea RepID=Q9M4Z5_SPIOL	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Putative peroxidase	-	-	3.114e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At1g05240; At1g05250; At1g05260; At3g21770; At5g42180; At5g51890; B1135C02.24-1; B1135C02.43; B1135C02.47; B1386G10.20; GSVIVT00003011001; GSVIVT00004228001; GSVIVT00006924001; GSVIVT00009482001; GSVIVT00011734001; GSVIVT00013661001; GSVIVT00015486001; GS

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to desiccation	GO:0009269	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Ethylene-insensitive 2	IPR017187	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51890.1	Peroxidase superfamily protein chr5:21091163-21092335 REVERSE LENGTH=322	45%
RefSeq	Arabidopsis thaliana	NP_200002.3	peroxidase 66 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002321949.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: No stop codon before M and low homology subject,

Fln protein: MANIECCKSTLFALMLCALAGAAISDDLQVGFYSATCPSAESIVYEVVAGAFASFPGTAARLIRLHFHDCFVRGCDASVLIDSDPKLGIVAEKDSPVNNPSLAGFDVIDQAKAKLEAKCPKTVSCADILAFAARDSVKLASLPGVPLSLKAYAVPAGRKDGKISLASEVAANLPAPTFNVEELTQSFSAKGLSQEDMVILSGAHTVGVSHCSSFRSRLYNFSTAVQTDPSLDPYYATVLKAQCPKGAYSNNQTTVAMESKTPLIVDNLYYDEVKAHRGLFTSDATLLTDPNTQNMVNQNSGPNLYSWQRKFAAAMVNDGKNLAY*

Protein Length: 326

Fln nts: AGGTTTTTCTCCAACCATCAACTTCCTGCCTCCATCCCAGTTGTGGA_-_ATGGCGAATATTGAGTGCTGTAAGTCTACCCTCTTTGCACTGATGCTTTGTGCCCTAGCTGGCGCTGCAATAAGCGACGACCTTCAAGTGGGCTTCTACAGTGCTACTTGTCCATCCGCAGAATCCATTGTCTATGAGGTTGTTGCAGGTGCATTCGCGAGCTTTCCTGGCACTGCTGCCAGACTCATACGGTTGCATTTTCACGATTGTTTCGTCAGGGGATGCGATGCTTCCGTTCTCATCGACTCCGATCCCAAACTCGGCATCGTGGCGGAGAAAGACTCGCCTGTTAACAATCCAAGCCTTGCAGGATTCGATGTGATTGACCAAGCCAAAGCGAAGCTGGAGGCCAAGTGCCCAAAAACTGTTTCCTGTGCAGACATCCTAGCATTCGCCGCTAGAGATAGCGTAAAGCTGGCTTCTCTACCTGGAGTACCTCTCAGTTTGAAAGCTTATGCTGTTCCCGCTGGACGAAAGGATGGAAAAATTTCACTAGCTTCAGAGGTTGCAGCAAATTTACCTGCCCCGACTTTCAATGTAGAGGAGCTCACACAGAGTTTTTCAGCCAAAGGTTTATCCCAAGAAGACATGGTTATACTGTCCGGAGCACACACAGTTGGTGTCTCGCACTGCTCTTCATTCCGGAGCAGGCTCTACAACTTCAGCACCGCTGTTCAGACGGACCCGTCTCTCGATCCTTATTATGCTACAGTGCTCAAGGCGCAGTGTCCCAAAGGCGCCTACAGCAACAACCAGACGACCGTGGCCATGGAAAGTAAAACACCCCTCATCGTGGACAATCTCTACTACGACGAAGTTAAAGCCCACCGCGGTCTGTTTACTTCTGATGCAACTCTGCTTACAGATCCAAACACACAGAATATGGTGAATCAAAACTCAGGCCCCAACTTGTACAGCTGGCAGCGAAAGTTTGCTGCTGCGATGGTAAACGATGGGAAAAACTTGGCGTATTGACTGGCAGT

Fln Alignment:

Contig30704___FALMLCALAGAAISDDLQVGFYSATCPSAESIVYEVVAGAFASFPGTAARLIRLHFHDCFVRGCDASVLIDSDPKLGIVAEKDSPVNNPSLAGFDVIDQAKAKLEAKCPKTVSCADILAFAARDSVKLASLPGVPLSLKAYAVPAGRKDGKISLASEVAANLPAPTFNVEELTQSFSAKGLSQEDMVILSGAHTVGVSHCSSFRSRLYNFSTAVQTDPSLDPYYATVLKAQCPKGAYSNNQTTVAMESKTPLIVDNLYYDEVKAHRGLFTSDATLLTDPNTQNMVNQNSGPNLYSWQRKFAAAMVNDGK
A9P1P4_______________FLIFACSLTDAA--GGLELNFYDKTCPGVSNVVEAVIAHYISKAPTLAAPLLRMHFHDCFVRGCDGSVLLNSTKSRK--AEKEA-APNLTLRGFQVIDAAKAAVEKVCPGVVSCADILALVARDAVHMLGGP-------FWNVPTGRRDGVVSIQNEAVAKLPPPNGTFSKLKSIFASNGLDVKDLVVLSGGHTIGMSHCNSFSSRLYNFTGKGDMDPSLDKSYAAHLKIKCKPG---DNKTIVEMDPGSFRTFDTHYYVNVKKNRGLFQSDAALLTNNEAQSYINKGLESSSFLWD--FARSMEKMGR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
79		16		83	0.994512
925	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain