SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30576

Length: 2845 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene30576
GAGTAATCGGTCGTCTTTCGTAGGGAGAACTTCAGACGATTTTCGGGCGTTTTCGGGGTATATTAGTAGCGGCCATGTCTCTCAGACCCATGTCGCGGACTGAGGTCCGAAAGAAGACGTACAAGGTGGCCGTTGATGCAGATGAGGCCCGAAGGAAGCGAGAGGATAATATGGTTGAAATCAGAAAGAGTAAGAGAGAGGAGAGCCTTCAGAAGAAGAGAAGGGAGGGTATGCAAGCGCAGCAATTTGCACCCACCGTGCAATCGTCTGCCGTTGAAAAGAAGTTGGAGAGTCTTCCTGCTATGGTTGCAGGAGTATGGTCCGATGAACCAAACCTGCAACTTGAAGCAACAACCCAATTCCGAAAGTTGCTTTCAATTGAGCGTAGTCCTCCTATAGAGGAAGTTATTGATGCAGGTGTTGTTCCTCGCTTTGTTGAATTCCTGACGAGGCATGATTTTCCACAGCTGCAGTTTGAAGCTGCATGGGCTTTGACAAACATAGCTTCAGGAACATCAGAGCATACACGAGTTGTGATTGACCGTGGAGCTGTGCCAATATTTGTACAACTGCTAAGTTCACCAAGTGATGATGTTCGTGAGCAGGCTGTTTGGGCATTGGGAAATGTGGCTGGTGACTCGCCTAAATGCAGAGATCTAGTTCTCAGCCATGGTGCCCTGATGCCACTCCTTGCTCAACTGAATGAGCACGCAAAGCTTTCTATGTTGAGAAATGCCACCTGGACCTTGTCTAATTTCTGTCGAGGCAAGCCACAACCTGCATTTGACCAGACAAAGCCAGCTCTACCAGCACTTGAGCGTCTGATTCATTCGAATGATGAAGAAGTCTTAACAGATGCTTGCTGGGCTCTGTCCTATCTGTCTGATGGAACAAATGATAAAATTCAAGCTGTGATCGAGGCTGGTGTCTGTCGAAGATTGGTTGAGCTTCTGCTTCATCCATCTCCATCTGTTCTTATCCCTGCTCTCCGGACTGTTGGCAATATTGTAACTGGAGATGATGTACAGACTCAGTACATTATCAACAATCAGGCACTTCCCTGCCTCTTGGCACTGTTGACCCATAATCATAAGAAAAGTATCAAGAAGGAAGCATGCTGGACGATCTCAAACATAACTGCAGGAAACAAAGATCAAATACAGGCTGTTATCGATGCAAACATCATTCCTCCTCTTGTACAGTTGCTGCAAACTGCTGAGTTTGATATCAAGAAGGAAGCAGCATGGGCTATATCTAATGCTACTTCTGGTGGTACACATGATCAAATCAAATATCTTGTGAATCAAGGATGCATCAAGCCTCTATGTGATCTTCTAGTCTGTCCAGACCCAAGAATTGTAACTGTTTGTCTTGAAGGGCTAGAGAATATTTTGAAAGTTGGGGAAGCAGAGAAGGACCTGGGGAACACTGGAGGAGTAAATCTCTATGCACAGTATATTGACGATGCTGAAGGACTTGAGAAGATTGAGAACCTGCAAAGTCATGACAATAATGAAATTTATGAGAAGGCAGTAAAGATTCTTGAAACTTACTGGCTGGAAGATGATGAAGATGACCAGACGTTACCTGCCACTGGAGATGCTGCACAACCAACGTTCAATTTTGGTGCAAATCAACCAACTGTTCCTTCTGGTGGATTCACCTTTGGTTGAAAAGGAATTTCAGCTATTGCAACCCGGGGGCGATGCTGTGGGTGTTTCAAAGAAAATATTCCAAGGCCTTATTACTACACTGTAGTCAGTCAGTCGTATGCAAGCAAATGCATGGTTTTTGGATGTTACTGGTGGCAGGTTACTTCTGTTGGTATGTCATTATGACAGTACTAACAAAATCGTGCAGATATAAGCTCCTCATTTTGAATGGGTTGGCCTTAATTGGCTTGGTGGTACAGTTTCCATGCTGTACTAGTAAGGTGGTCTTTGTCCATAAGTCATAAAATTGCATAGTTAGATAAATGGACTCTTATCCGATGAGCCTTCTGACCTTTAAAGCTCAATGCTTGAGCCTATTGATATGTTGCCAAGTTGAATGCCAACTTTTGGGTGTTTAGACGAAGCAGTTTGATGGGTCATGAAGGCTCATGGTAATACTAATTGTCTGGTTCTACTTGCATGTGTCCTCCATTTCATCAAAGAGTCTGTCCCATATCGGTCTTGTGGCTAGTAAATGGCCTTACTAACATACTGTTCTGGGATAATCCTGGAACTGTGAGAAGTGCATGTAATCATGTGCTCTCTTCTTCTCCTCTGGCATTTTACCCAGAGTTTGCATTGGATTTTTCACGTTCAAGTGAGTCCTGATCCCTCTCTTCCCTTCTCTTTCTTGTGACAAACTTTGGATGACCCAGAGTTTTGTTCGGATTTCCACTTTCAAGTGAGTCCTATGACCCTTTTTTTTCCCTCTCTTTCTCGTGCTAACATGTGGACGGGAATAGAGAAAATTCTCTCTTGGAAGTCTGATAGGATTTCCTCCTCATACGGGTACATTCTGTGTCTCAGACCCCTCCTGTTGCCAGTGGTCATTCTATTTTGGTAGTTGAAACTTTTATTAAATCATTTTATGCACTCGCAATATTTGTCTCCGGACTTGGAGACTGTTTTGCTATGTAATTTTTTAGAATTCTATTGTTAATGAATTTAGAGGCCTTCTATCAACGTTTTTATATGTTTGGATAAAATAAGCTTGAGTTTTGAGATCATGTTGGGATCGTTTTATAAAATATGTCTATGCATCTGAATGGCTATACTTGGTCCTCAACATTCTAATGTGTTTCACAAACGGTCTGCAGATATTTGACAATGGATTTCGGTTGATGTTGCATTAC

Ace file of the UniGene sp_v3.0_unigene30576 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	importin alpha 2 [Capsicum annuum]	-	-	84%
FL-Next	sp=Importin subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	82%
Sma3	Chromosome chr5 scaffold_64, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00033097001;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus	GO:0006606	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Importin-alpha, importin-beta-binding domain	IPR002652	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G06720.1	AT-IMP, ATKAP ALPHA, AIMP ALPHA, IMPA-1, IMPA1 importin alpha isoform 1 chr3:2120559-2123555 FORWARD LENGTH=532	82%
RefSeq	Arabidopsis thaliana	NP_850524.1	Importin subunit alpha-1 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002330241.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q96321

Fln msg:

Fln protein: MSLRPMSRTEVRKKTYKVAVDADEARRKREDNMVEIRKSKREESLQKKRREGMQAQQFAPTVQSSAVEKKLESLPAMVAGVWSDEPNLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVEFLTRHDFPQLQFEAAWALTNIASGTSEHTRVVIDRGAVPIFVQLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCRRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQYIINNQALPCLLALLTHNHKKSIKKEACWTISNITAGNKDQIQAVIDANIIPPLVQLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVNQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKDLGNTGGVNLYAQYIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDEDDQTLPATGDAAQPTFNFGANQPTVPSGGFTFG*

Protein Length: 534

Fln nts: GAGTAATCGGTCGTCTTTCGTAGGGAGAACTTCAGACGATTTTCGGGCGTTTTCGGGGTATATTAGTAGCGGCC_-_ATGTCTCTCAGACCCATGTCGCGGACTGAGGTCCGAAAGAAGACGTACAAGGTGGCCGTTGATGCAGATGAGGCCCGAAGGAAGCGAGAGGATAATATGGTTGAAATCAGAAAGAGTAAGAGAGAGGAGAGCCTTCAGAAGAAGAGAAGGGAGGGTATGCAAGCGCAGCAATTTGCACCCACCGTGCAATCGTCTGCCGTTGAAAAGAAGTTGGAGAGTCTTCCTGCTATGGTTGCAGGAGTATGGTCCGATGAACCAAACCTGCAACTTGAAGCAACAACCCAATTCCGAAAGTTGCTTTCAATTGAGCGTAGTCCTCCTATAGAGGAAGTTATTGATGCAGGTGTTGTTCCTCGCTTTGTTGAATTCCTGACGAGGCATGATTTTCCACAGCTGCAGTTTGAAGCTGCATGGGCTTTGACAAACATAGCTTCAGGAACATCAGAGCATACACGAGTTGTGATTGACCGTGGAGCTGTGCCAATATTTGTACAACTGCTAAGTTCACCAAGTGATGATGTTCGTGAGCAGGCTGTTTGGGCATTGGGAAATGTGGCTGGTGACTCGCCTAAATGCAGAGATCTAGTTCTCAGCCATGGTGCCCTGATGCCACTCCTTGCTCAACTGAATGAGCACGCAAAGCTTTCTATGTTGAGAAATGCCACCTGGACCTTGTCTAATTTCTGTCGAGGCAAGCCACAACCTGCATTTGACCAGACAAAGCCAGCTCTACCAGCACTTGAGCGTCTGATTCATTCGAATGATGAAGAAGTCTTAACAGATGCTTGCTGGGCTCTGTCCTATCTGTCTGATGGAACAAATGATAAAATTCAAGCTGTGATCGAGGCTGGTGTCTGTCGAAGATTGGTTGAGCTTCTGCTTCATCCATCTCCATCTGTTCTTATCCCTGCTCTCCGGACTGTTGGCAATATTGTAACTGGAGATGATGTACAGACTCAGTACATTATCAACAATCAGGCACTTCCCTGCCTCTTGGCACTGTTGACCCATAATCATAAGAAAAGTATCAAGAAGGAAGCATGCTGGACGATCTCAAACATAACTGCAGGAAACAAAGATCAAATACAGGCTGTTATCGATGCAAACATCATTCCTCCTCTTGTACAGTTGCTGCAAACTGCTGAGTTTGATATCAAGAAGGAAGCAGCATGGGCTATATCTAATGCTACTTCTGGTGGTACACATGATCAAATCAAATATCTTGTGAATCAAGGATGCATCAAGCCTCTATGTGATCTTCTAGTCTGTCCAGACCCAAGAATTGTAACTGTTTGTCTTGAAGGGCTAGAGAATATTTTGAAAGTTGGGGAAGCAGAGAAGGACCTGGGGAACACTGGAGGAGTAAATCTCTATGCACAGTATATTGACGATGCTGAAGGACTTGAGAAGATTGAGAACCTGCAAAGTCATGACAATAATGAAATTTATGAGAAGGCAGTAAAGATTCTTGAAACTTACTGGCTGGAAGATGATGAAGATGACCAGACGTTACCTGCCACTGGAGATGCTGCACAACCAACGTTCAATTTTGGTGCAAATCAACCAACTGTTCCTTCTGGTGGATTCACCTTTGGTTGA___AAAGGAATTTCAGCTATTGCAACCCGGGGGCGATGCTGTGGGTGTTTCAAAGAAAATATTCCAAGGCCTTATTACTACACTGTAGTCAGTCAGTCGTATGCAAGCAAATGCATGGTTTTTGGATGTTACTGGTGGCAGGTTACTTCTGTTGGTATGTCATTATGACAGTACTAACAAAATCGTGCAGATATAAGCTCCTCATTTTGAATGGGTTGGCCTTAATTGGCTTGGTGGTACAGTTTCCATGCTGTACTAGTAAGGTGGTCTTTGTCCATAAGTCATAAAATTGCATAGTTAGATAAATGGACTCTTATCCGATGAGCCTTCTGACCTTTAAAGCTCAATGCTTGAGCCTATTGATATGTTGCCAAGTTGAATGCCAACTTTTGGGTGTTTAGACGAAGCAGTTTGATGGGTCATGAAGGCTCATGGTAATACTAATTGTCTGGTTCTACTTGCATGTGTCCTCCATTTCATCAAAGAGTCTGTCCCATATCGGTCTTGTGGCTAGTAAATGGCCTTACTAACATACTGTTCTGGGATAATCCTGGAACTGTGAGAAGTGCATGTAATCATGTGCTCTCTTCTTCTCCTCTGGCATTTTACCCAGAGTTTGCATTGGATTTTTCACGTTCAAGTGAGTCCTGATCCCTCTCTTCCCTTCTCTTTCTTGTGACAAACTTTGGATGACCCAGAGTTTTGTTCGGATTTCCACTTTCAAGTGAGTCCTATGACCCTTTTTTTTCCCTCTCTTTCTCGTGCTAACATGTGGACGGGAATAGAGAAAATTCTCTCTTGGAAGTCTGATAGGATTTCCTCCTCATACGGGTACATTCTGTGTCTCAGACCCCTCCTGTTGCCAGTGGTCATTCTATTTTGGTAGTTGAAACTTTTATTAAATCATTTTATGCACTCGCAATATTTGTCTCCGGACTTGGAGACTGTTTTGCTATGTAATTTTTTAGAATTCTATTGTTAATGAATTTAGAGGCCTTCTATCAACGTTTTTATATGTTTGGATAAAATAAGCTTGAGTTTTGAGATCATGTTGGGATCGTTTTATAAAATATGTCTATGCATCTGAATGGCTATACTTGGTCCTCAACATTCTAATGTGTTTCACAAACGGTCTGCAGATATTTGACAATGGATTTCGGTTGATGTTGCATTAC

Fln Alignment:

Contig30576___MSLRPMSRTEVRKKTYKVAVDADEARRKREDNMVEIRKSKREESLQKKRREGMQAQQFAPTVQSSAVEKKLESLPAMVAGVWSDEPNLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVEFLTRHDFPQLQFEAAWALTNIASGTSEHTRVVIDRGAVPIFVQLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFDQTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCRRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQYIINNQALPCLLALLTHNHKKSIKKEACWTISNITAGNKDQIQAVIDANIIPPLVQLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVNQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKDLGNTGGVNLYAQYIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDEDDQTLPATGDAAQPTFNFGANQPTVPSGGFTF
Q96321_______________MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1221	83	16			0.994512
1222	83	16			0.994512
1223	83	16			0.994512
1293	89		10		1.0
2347	2			97	0.967822
2348		2		97	0.967822
2349	2			97	0.967822
2350			97	2	0.967822
2385	89	1			1.0
2413	96			3	0.990463
2414	96			3	0.990463
2567	10			90	0.90298
2607	10	90			0.90298
2608		10	90		0.90298
2609	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain