SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30461

Length: 1102 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene30461

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=1 Tax=Picea abies RepID=Q4W2V5_PICAB	-	-	86%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	94%
Sma3	Peroxidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AP22.54; At4g36430; At5g05340; At5g06720; At5g06730; At5g58390; At5g58400; C7A10.930; DIDI 6G-3B; FBP3; FBP5; GSVIVT00015158001; GSVIVT00015159001; GSVIVT00015160001; GSVIVT00018769001; GSVIVT00018771001; GSVIVT00023967001; GSVIVT00023969001; GSVIVT000239

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Alpha-N-acetylglucosaminidase	IPR007781	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05340.1	Peroxidase superfamily protein chr5:1579142-1580819 REVERSE LENGTH=324	63%
RefSeq	Arabidopsis thaliana	NP_196153.1	peroxidase 52 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002319407.1	predicted protein, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q4W2V5

Fln msg: Separated hits, possible frame ERROR between 858 and 860,

Fln protein: MKTFLFIALCVLCISSINYAAHGQLTSTFYSKVCPTALSIVKAAVTKAVNNEKRMGASLLRLHFHDCFVNGCDGSILLDDNSTFTGEKTAGPNANSVRGFDVIDTIKTQVEAACSGVVSCADILAIAARDSIVQLGGPTWTVLLGRRDSTTASLSAANNNIPSPASNLSALISSFTAHGLSTKDLVALSGAHTIGQARCTTFRARVYNESNIDTSFATSVKANCPSAGGDNTLSPLDLATPTTFDNKYYTDxxEAISGGSTNSQVTTYSSNQNTFFTDFTAAMVKMGNISPLTGTNGQIRKNCRKAN*

Protein Length: 309

Fln nts: CACACCAACTTCCCACATTCAATTCAATTCAATTCATCTCCATTCAATTCCCTTCTCTTTGCTTTTTCCTTTCCGGGCTATAAGCAGTTAATTTTTCTAGTC_-_ATGAAGACTTTCCTATTCATTGCTCTCTGTGTGCTGTGTATAAGCTCTATTAATTACGCTGCGCATGGGCAGCTGACCTCAACATTTTACAGCAAAGTGTGTCCGACGGCGCTTTCGATAGTGAAAGCCGCAGTGACGAAAGCCGTCAACAATGAGAAACGGATGGGGGCGTCCTTGCTGCGCCTTCACTTCCACGATTGCTTCGTTAATGGTTGCGATGGGTCGATACTGTTGGATGATAACTCAACCTTTACCGGAGAAAAGACTGCAGGCCCAAATGCTAATTCTGTGAGAGGATTCGACGTAATAGACACCATCAAAACTCAAGTTGAGGCAGCCTGCAGTGGTGTCGTGTCATGTGCCGACATTCTCGCCATTGCTGCTCGCGATTCAATCGTCCAACTGGGAGGCCCAACATGGACGGTACTTCTGGGAAGGCGAGACTCTACGACTGCGAGTTTAAGCGCCGCAAACAACAACATTCCGTCCCCCGCTTCGAATCTCAGCGCCTTAATCTCCTCTTTTACAGCACATGGTCTTTCCACAAAGGATCTCGTTGCACTCTCGGGAGCTCATACGATTGGCCAAGCGCGGTGCACCACATTCAGAGCTCGCGTATACAACGAATCCAACATTGACACTTCCTTCGCCACTTCGGTGAAGGCAAACTGTCCAAGCGCTGGTGGCGACAACACCCTCTCGCCCTTAGATCTGGCCACGCCTACCACATTTGACAACAAGTATTACACTGATTTxxxAGAAGCCATTAGCGGAGGCTCTACAAATTCTCAAGTCACCACCTACAGCTCTAATCAAAACACCTTCTTTACGGACTTTACAGCCGCCATGGTGAAAATGGGGAATATTTCTCCTCTCACTGGTACCAACGGACAAATCCGCAAGAACTGCAGGAAGGCCAATTAA___GGGTTAGGAACATTTTTTCTTCGTTGTAACAAATTCATTGCCAATTGGCTACCGGAAAAAACCAATAAACTAAATTGG

Fln Alignment:

Contig30461___MKTFLFIALCVLCISSINYAAHGQLTSTFYSKVCPTALSIVKAAVTKAVNNEKRMGASLLRLHFHDCFVNGCDGSILLDDNSTFTGEKTAGPNANSVRGFDVIDTIKTQVEAACSGVVSCADILAIAARDSIVQLGGPTWTVLLGRRDSTTXXXXXXXXXXXXXXXXXXXLISSFTAHGLSTKDLVALSGAHTIGQARCTTFRARVYNESNIDTSFATSVKANCPSAGGDNTLSPLDLATPTTFDNKYYTDLxEAISGGSTNSQVTTYSSNQNTFFTDFTAAMVKMGNISPLTGTNGQIRKNCRKAN
Q4W2V5_______________MKTLACIVLCVLCISSINNAAHGQLTSTFYNKLCPTALSIVKAAVNKAVNNEKRMGASLLRLHFHDCFVNGCDGSILLDDNSTFTGEKTALPNANSVRGFDVIDTIKTQVEAACSGVVSCADILAIVARDSVVQLGGPTWTVLLGRRDSTTASLSAANNNIPSPASNLSALISSFTAHGLSTKDLVALSGGHTIGQARCTTFRARIYNESNIDTSFATSVKSSCPSAGGDNTLSPLDLATPTTFDNKYYTDLxQLFSGGSTNSQVTTYSANQNTFFTDFAAAMVKMGNISPLTGTSGQIRKNCRKAN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1026	16		83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
17	36	ATTCA ATTCA ATTCA ATTCA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain