SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30333

Length: 1144 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene30333 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S5-1 [Arabidopsis thaliana] ref\|NP_001031502.1\| 40S ribosomal protein S5-1 [Arabidopsis thaliana] sp\|Q9ZUT9.1\|RS51_ARATH RecName: Full=40S ribosomal protein S5-1 gb\|AAC98068.1\| 40S ribosomal protein S5 [Arabidopsis thaliana] gb\|AAL24	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S7	IPR000235	-	0.0	-
Sma3	Ribosomal protein S7, eukaryotic/archaeal	IPR005716	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37270.1	ATRPS5B, RPS5B ribosomal protein 5B chr2:15647883-15649042 REVERSE LENGTH=207	91%
RefSeq	Arabidopsis thaliana	NP_001031502.1	40S ribosomal protein S5-1 [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002309278.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRE6

Fln msg: your sequence is longer than subject: 253 - 198

Fln protein: MKQIQEALATPIGAAADFDEDELDVELSLRRRKRWAKRPEQEGPQVCRGVEGEAMAATLPQPEVKLFNRWTFEDVEVNDLSLADYIAVSSQKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR*

Protein Length: 254

Fln nts: GATCAATGAACAGACAGAGAAT_-_ATGAAGCAGATCCAAGAGGCCTTGGCAACACCTATTGGTGCAGCTGCAGATTTTGATGAGGATGAACTGGACGTTGAGCTGAGCCTGAGGAGGAGGAAGAGGTGGGCGAAGAGACCTGAGCAGGAGGGACCGCAGGTGTGCAGAGGAGTAGAAGGAGAAGCTATGGCGGCCACTTTACCACAGCCCGAAGTGAAGCTCTTCAATCGCTGGACCTTTGAGGACGTAGAGGTTAATGATCTATCACTAGCAGATTACATAGCTGTCTCATCACAAAAACATGCAACATTTGTTCCACACACAGCTGGCCGTTACTCAGTCAAACGGTTTCGGAAGGCTCAATGCCCTATTGTTGAACGATTGACCAACTCTTTGATGATGCACGGGCGTAACAATGGAAAGAAGTTGATGGCTGTACGAATAGTCAAACATGCTATGGAAATAATTCATCTCCTTACTGATCAGAACCCAATACAGGTTATAGTGGATGCCATCATAAACAGTGGTCCAAGAGAAGATGCTACTCGAATTGGTTCAGCTGGTGTTGTTCGACGTCAAGCAGTTGATATATCTCCTTTGAGACGTGTAAATCAAGCAATCTTTCTGCTCACCACTGGTGCGCGAGAAAGTGCATTCCGAAATATAAAAACGATAGCTGAGTGCCTTGCAGATGAGCTTATCAATGCCGCAAAGGGGTCTTCAAACAGTTATGCAATCAAGAAGAAGGATGAGGTTGAGCGTGTTGCGAAGGCAAATCGTTGA___TCTATTTCAATTATTTCCTTTTTTGGTTTAAATGAGAAGAGTAAACACATTCACATGGAGTTATTTTCTGTGAAAATTGTTTATTCTGCTACCATGCATAGCAGTACGAGGAATTGCTTGAACGACAGGTTTTAGGAGAGTAGCGACTTGGAGTGCAGGATTAGTTTATACTATATAGGTTTAACAATTTGATCTTTCCCATGAATTTTTGCCAATTTTGATTTTACATTGAGGAATTATGATTGGATTTGTTCTAAATGATTTATTCTGTTTGGTGGGATTGCCTTTATTGTTATCAAGATCTCTTTACAAATTCTAATGCAATGACTCTTTATAGTAATTTATAATGCAATGATTTGTCAT

Fln Alignment:

Contig30333___MAATLPQPEVKLFNRWTFEDVEVNDLSLADYIAVSSQKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR
A9NRE6_______________MAATLPQPEVKLFNRWTFEDVEVNDLSLADYIAVQSQKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
481		20		80	0.995493
726	9			90	0.999872
886		2	97		0.971188
935		2		97	0.979771
951			96	3	0.991164
993	15		63	20	1.0
1000		85		13	1.0
1022		94		1	0.930835
1044		20	20	20	0.994159
1045	20	20		20	0.994159
1053	33	33	33		0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain