SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene30017

Length: 566 nt

UniGene Fasta

>sp_v3.0_unigene30017
GTTGTGTATGCCCATGTGCAAACATCGAAGGGCTCAGATCAGCGTGATCAGAAGAAGAAGAATATTAATAATAATCTGTACCATGTTCTGGGATTATCATTTGGGGCAACCAGGGAAGAAATAAAGGCATCATATCGAAGACTGGCCAGACTCCATCACCCAGACGCTGCGCCTCCTGATGAGAAGGATAAGTACGCCAGGAATTTCATGGATATACACATTGCCTATACCACTCTGTCGAATCCTCAGTCCAGGGCTGATTATGATCGCCCACTTATCACTTCCATGAAATATCGTTGGAGATCACGGAGCTGGGAAACAGATCAGTGCTGGTGATGGTCATGGATATTAATCAGCATTGCCTCGTTGAAGCGCTATTTTGGAGCTGTGAAAACTTCGAAGATCTACTGGTATTTGGGGGACCGTAAAATAATGGTGGGAGCATTAGAAGGTTTCTGGGGCTGGATTTCAGCTCTATTTTTAGGATAACGTTGGAGAACAAGTCTACATTTAAAACCAATAAGCTATGCAACATATTTCCAAATGGATCATTCTAGTTTTGGAGG

Ace file of the UniGene sp_v3.0_unigene30017

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone protein dnaJ 11, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9S6N6_RICCO	-	-	3.0e-20	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Chaperone protein dnaJ 11, chloroplast, putative	-	-	1.227e-09	-

Source	Gene names
Sma3	GSVIVT00014409001; RCOM_0870400; RCOM_1598190; VITISV_035335;

Source	GOs	Term	Type	Identity
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002327752.1	predicted protein [Populus trichocarpa]	9.0e-24	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRI3

Fln msg: your sequence is shorter than subject: 112 - 188

Fln protein: VVYAHVQTSKGSDQRDQKKKNINNNLYHVLGLSFGATREEIKASYRRLARLHHPDAAPPDEKDKYARNFMDIHIAYTTLSNPQSRADYDRPLITSMKYRWRSRSWETDQCW*

Protein Length: 113

Fln nts: GTTGTGTATGCCCATGTGCAAACATCGAAGGGCTCAGATCAGCGTGATCAGAAGAAGAAGAATATTAATAATAATCTGTACCATGTTCTGGGATTATCATTTGGGGCAACCAGGGAAGAAATAAAGGCATCATATCGAAGACTGGCCAGACTCCATCACCCAGACGCTGCGCCTCCTGATGAGAAGGATAAGTACGCCAGGAATTTCATGGATATACACATTGCCTATACCACTCTGTCGAATCCTCAGTCCAGGGCTGATTATGATCGCCCACTTATCACTTCCATGAAATATCGTTGGAGATCACGGAGCTGGGAAACAGATCAGTGCTGGTGA___TGGTCATGGATATTAATCAGCATTGCCTCGTTGAAGCGCTATTTTGGAGCTGTGAAAACTTCGAAGATCTACTGGTATTTGGGGGACCGTAAAATAATGGTGGGAGCATTAGAAGGTTTCTGGGGCTGGATTTCAGCTCTATTTTTAGGATAACGTTGGAGAACAAGTCTACATTTAAAACCAATAAGCTATGCAACATATTTCCAAATGGATCATTCTAGTTTTGGAGG

Fln Alignment:

Contig30017___VVYAHVQTSKGSDQRDQKKKNINN-NLYHVLGLSFGATREEIKASYRRLARLHHPDAAPPDEKDKYARNFMDIHIAYTTLSNPQSRADYDRPLITSMKYR---------WRSRSWETDQC
B8LRI3_______________VIYAHVQTSMGSDQLKTRTVNCSSINLYHVLGLSFGASKEEIKASYRRLARLHHPDAAPPDGKDKSAQDFMDIHTAYTTLYNPHSRADYDRRLMTSMKVRNGGIYGGQQWKGRSWETDQC

SSRs (tot: 1)

Start position	End position	Sequence	Length
50	62	AGA AGA AGA AGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain