SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29941

Length: 940 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene29941 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C1, C1-B73, C1-I, c1-I-2K1; myb-related protein c1-I-2K1	-	-	8.0e-07	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	Gene names
Sma3	C1; C1-B73; C1-I; DcMYB3-1; DcMYB3-2; GSVIVT00009522001; GSVIVT00032266001; HlMYB2; MYB086; MYB104; MYB129; MYB183; Myb23; POPTRDRAFT_668844; POPTRDRAFT_676836; POPTRDRAFT_717084; POPTRDRAFT_799718; Pl; Pl-Bh (Blotched1); RCOM_0712550; VITISV_001712; Z438

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002320853.1	predicted protein [Populus trichocarpa]	1.0e-11	61%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
26	80		20		0.995493
27		80	20		0.995493
51	77		11	11	0.968132
62	22			77	0.999999
68	22		77		0.999999
78		87		12	0.992554
91		33	33		0.997753
95		66		33	0.997452
97	33		66		1.0
126	33		66		0.997452
862		66		33	1.0
925	50	50			1.0
926		33		66	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
343	357	AAAC AAAC AAAC AAA	15
711	722	CCT CCT CCT CCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain