SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29786

Length: 799 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene29786 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	30S ribosomal protein S20, putative n=1 Tax=Ricinus communis RepID=B9T1X1_RICCO	-	-	4.0e-30	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	At3g15190; F4B12.10; GSVIVT00027731001; Os01g0678600; OsI_03263; OsJ_03005; PHYPADRAFT_18492; PHYPADRAFT_8053; POPTRDRAFT_670039; RCOM_0108620; RPS20;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S20	IPR002583	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15190.1	chloroplast 30S ribosomal protein S20, putative chr3:5116216-5117412 FORWARD LENGTH=202	2.0e-33	65%
RefSeq	Arabidopsis thaliana	NP_188137.1	30S ribosomal protein S20 [Arabidopsis thaliana]	2.0e-33	65%
RefSeq	Populus trichocarpa	XP_002329074.1	predicted protein [Populus trichocarpa]	3.0e-38	72%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain