SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29478

Length: 1031 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene29478

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class IV chitinase Ab n=3 Tax=Pinus monticola RepID=Q596H7_PINMO	-	-	83%
FL-Next	tr=Class IV chitinase A; Pinus monticola (Western white pine) (Strobus monticola).	-	-	92%
Sma3	Class IV chitinase A	-	-	-

Source	Gene names
Sma3	Ch4A;

Source	GOs	Term	Type	Identity
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43590.1	Chitinase family protein chr2:18081592-18082749 REVERSE LENGTH=264	53%
RefSeq	Arabidopsis thaliana	NP_181887.1	chitinase-like protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002326042.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q596H9

Fln msg:

Fln protein: MGSSSGNSVMVVVVLVLLLMGVSVHAQNCGCASGLCCSKYGYCGTSSAYCGAGCKSGPCSSSGGGSPSGGGGSVGTIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSADVRKRELAAFFANVMHETGGMCYINERNPPINYCMSSATWPCASGKSYHGRGPLQLSWNYNYGAAGQSIGFDGVNNPEKVGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAINSQECNGGNSGEVNSRVNYYKNICSQLGVDPGANVSC*

Protein Length: 278

Fln nts: ATCAAATAATCTCTGTGAGTGGGGAGTCTTAAGAAATTGTTGGCA_-_ATGGGGAGTAGTAGCGGTAACTCAGTAATGGTGGTGGTGGTGCTAGTCCTGCTACTGATGGGCGTCAGTGTTCATGCTCAAAACTGTGGCTGTGCCAGCGGACTGTGTTGCAGCAAGTATGGATACTGTGGAACCAGCTCTGCTTACTGCGGCGCTGGCTGCAAGAGTGGTCCATGTTCCAGTTCAGGGGGAGGATCTCCAAGTGGCGGAGGTGGAAGCGTGGGTACCATAATTTCCCAGAGTTTCTTCAATGGCCTCGCGGGCGGAGCTGCCAGCTCCTGCGAGGGCAAGGGATTCTACACATACAATGCTTTCATCGCAGCGGCCAATGCGTATTCTGGATTTGGCACCACTGGATCCGCAGACGTCAGAAAGAGAGAACTCGCGGCCTTCTTCGCTAATGTTATGCACGAAACTGGAGGGATGTGCTACATCAATGAGAGAAACCCTCCAATAAACTACTGTATGAGTTCAGCCACGTGGCCGTGTGCGAGTGGTAAGAGCTACCATGGACGTGGCCCTCTCCAGTTGAGCTGGAATTACAATTATGGAGCAGCTGGGCAGAGCATTGGGTTCGACGGGGTGAACAACCCAGAGAAGGTGGGACAAGACTCCACCATTTCGTTCAAGACGGCGGTGTGGTTCTGGATGAAGAACAGCAACTGTCACTCCGCCATAACGTCAGGGCAGGGCTTCGGTGGCACAATCAAAGCCATCAACAGCCAGGAATGCAACGGCGGAAACAGTGGGGAAGTGAATAGCAGAGTGAACTACTACAAGAATATCTGTAGCCAGTTGGGTGTGGATCCTGGAGCCAACGTCTCGTGCTAA___ATCTCTCTTTTTCTTCATGGCTACTAAATATATGAATAAGACATCAATGATCATTGATGTCCATGGCCATGGCCACCTAGTAAATAAAAATTGCTCTGCACATCTCTTTGCAAATATCATCTTCATCTTACTAATGAAATTTCTTTGAATCAAAA

Fln Alignment:

Contig29478___HAQNCGCASGLCCSKYGYCGTSSAYXXXXXXXXXXXXXXXXXXXXXXXXXXTIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSADVRKRELAAFFANVMHETGGMCYINERNPPINYCMSSATWPCASGKSYHGRGPLQLSWNYNYGAAGQSIGFDGVNNPEKVGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAINSQECNGGNSGEVNSRVNYYKNICSQLGVDPGANVSC
Q596H9_______________NAQNCGCASGLCCSQYGYCGSSSAYCGAGCKSGPCSGGGSPSGGGGSVG--TIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSADVTKRELAAFLANVMHETGGMCYINERTPPMIYCMSSATWPCASGKSYHGRGPLQLSWNYNYGAAGQSIGFDGVNNPEKVGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAINSQECNGGNSGEVNSRVNYYKNICSQLGVDPGANLSC

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
306		75	25		0.996473
307	75		25		0.996473
827	11		88		1.0
943			94	5	0.999994
945		94	5		0.999995
948	1		84		1.0
961	95		4		0.997494
966	95			5	0.997749
969			5	95	0.997749
971	5	95			0.997749
987	5		94		0.998744
1005		52		48	1.0
1023		13		86	0.999973

SSRs (tot: 1)

Start position	End position	Sequence	Length
74	87	TGG TGG TGG TGG TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain