SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene29438

Length: 2848 nt

UniGene Fasta

>sp_v3.0_unigene29438
TTAAAACGCAGTTTAATGTGTCTACAGCTTCACCTTTCATTTCGACTCGACAGTCAATCATTCCTCACGCGAAGTGTAGTGAAGAGAACACGCAATTGGTGGCCAGAATACGAAGAGAAGTTGGAGCTTCTGCGATTCGAACTCGCAACATGTCTAGCCCAGCCGAGAAGGAGCAGCAGCATGCTGAGAAGGAACCCGAGATGGAAGCACAACCAGACTCCGTTGAAGTTGTTTCCGTCGAGCTTCCAGCTCCCCCAGGATGGAAGAAACAGTTTATTCCCAAGAAAGGGGGGACCCCAAAGAGGAATGAGATTATTTTCATTGCTCCTACAGGTGAGGAGATCAAGAATAAGCGGCATCTGTCGCAGTACTTGAAAGCCCATCCAGGAGGTCCTGATATTACGGAATTTGAGTGGGGCACAGGTGATACACCAAGGAGATCTGCAAGATTAAGTGAGAAGCCAAAAACAACCGAAACCCCAGAAAGTGAGTCTAAAAAGACAACTCCAAAGCGATCTAGGAAATCAGAGGGCGCTTCTGAAAATGCAAAAGAAAAGAAAAAGAAAGGAGCTGAAGCCCCTTCTCAAGAACTTGAAGCTGGAAAGGAAGAAGAAATGCAAGATGTTGAGAATGTGGAGGATTCAGCTAAAGGAAAAACTTCTGCTTCAGAAACGGCGGAAGATGTTGGAAAAGATGAGAAGGATGACGAGAAAGAGAAACCAGCAATGAAGGCTGAAGAGCAACAAGAAGACAATGAAGAAAAACCAGAATCAGAACCTGATGTGATGACTGATGGACCTAAATCTGATGAAGCAGTGGAGGTGGCTGCTGACAAAGGAGAAGAAACACCATTGAAGGATCCGAAAGTTCAGGAGGTGGAAGGGGCAGGAACTGAGAAGACAGAAGTGAAACAGAAAGAAGAAACGCAAGAAGAGCACCATGGTGGGGATGGCAAACCTGAGGAGATAACAACTGCGGTGCCAGTAGAATCACTGGAGGCAAAGGAGGAGAATAAATGTGCTGGATCTTATGTTGACAACTCTAAGAACGGGGAACCTGTAGAGCAAATGGAAGTAGCACGTGAACCTAATGAAAAGCATGCTAGTCAAGAGAATGCACAGCTACGAGAGATTAATTCTCTGCGATGCGAGCAGCTCCCTGAACCATCTTCAGTGAGCTGCTGAATCCCATCGTTTCTCCGCTGTGTATTGTTATAGTTTAGTACATGATTCATCGTTAGCCGTGCTTCAGGTTTGGGGTTTTGTGTAGGTAATAAATTCTTACAAAGGTCTTTTTAGCATTGCAATGCGGTAGCAATGCCACATCTCAAATCTAAACAACGGAACCTGGGGATGCAGTTTGTCTGTTGACATTGCAGACTCACCTAAATCAGAGCTTTTCGAAGCATGCACTTTGCATTTCTGATACAATTCGATTTCTAACTTTGTAAGTTTATTCTGCTAATGCTGTTATTCGACCATGTAATCGATGGGCTTTGGTGCCCTCCAAAGACTTATCTGCGCTGTAACTTGTTTAAATTGGGTAGTTTTGACAGCCTTTACTTTTATGGAACTTTTGAGTGTCTTCTGCAGAGCAGGTTTGAGGAAGTCAAATTCGTTTTTGCTCTGAAATTCTGAAGCCTTTCAGGACATGCAATATAGGCAAGTTGCTCAATGACTCACGGACCTGCTGATGTAGTGTTGTCTATTGCTATTCCGTTTTGTTCCAAGTCAACTCAGTCCATGTTACACTGGTAGAGGAATACCTCTATTAATGTTACTAAGACAACATTGCAAATTTTTAAACACACATGCAATATAGGCAAGTTGATCAATGACTTACGGACCTGCTGATGTAGTGTTGTCTATTACTTTTCCGTTTTGTTCCAAGTCAACTCAGTCCATGTTACACTGGTAGAGGAATATCGTTCTCCAAAATACTTGAAGTGATTCAAAAGACAGATTGCTGAGGAACTCCAGATTGTAGAGTATCAGTGAGACATACAGAGGGCGTGTCAATGTGTCTGTGTACATACGTAGGTAATGTGTTTGTGTGTGCGCTATCATGAATGAGAAAGCTTTTCAATGTAGATACGAGATGGAGATGATGGCAAAAGGATGCTGAGTTGAAGGTAGCAAGTTATGCCCTTCCAAACATCATATCTCAGTTGGAGCCATGGCAGTTTATAATGAGCGAGCAATGGTTATTTAAGGCAAAGCCACATGATTGGTTCTTGCCAAAGCAAAATTGGAGAATCAACATGGCAATGGCTTGGAAGTACTCGCCAGTAGTTCGGCCGATTAAAACTACAATAGCTCCTACTGTTAATCTGCAATAATAAAGCAATAATTCAACAAAACTTGGCAATAAAATAACCTGGAACTTGTTGAATTGCTCCACACTAGGTGTACTTCGCAGCCTTGCCAAGTCTCTCAAGATACACCGAATTTCTATGAGCATGGCTCACATGACTGGCATTGACCCAAGCCACTTAAGTCACCAAGTTCCAAGGAGCCATGTAACTGTGGCTTAGGGGCCAACACAGGTAGCCCTTATATGTACTATGAATGATTACTAGTGTTTTTTCACGATGTCGGAATTATTGGATTGTGCTGAGTGGTTTTATTGGATTGTACAGTTCTTTTGTCGACGCATTTTGTCTTTTAGAAAATATGAAGTTTCATTATTTTTAGAGATTGTAACTAAGAATTCTTGTAAATTATTGTTCTCTCGCAGTGGTTGCATTACTGGCATCAATCCAGTTGTATATAAATTTGACATGCGTCAGCAAAGTACGAGAAGTTTTTACCCCTTATTACATAGAAACCTAAAGCAAATAAGGATTCCC

Ace file of the UniGene sp_v3.0_unigene29438

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative methyl-binding domain protein n=1 Tax=Cryptomeria japonica RepID=Q1XG62_CRYJA	-	-	9.94922e-44	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15340.1	MBD10 methyl-CPG-binding domain 10 chr1:5275895-5277474 REVERSE LENGTH=384	3.0e-28	65%
RefSeq	Arabidopsis thaliana	NP_563971.1	methyl-CPG-binding domain 10 [Arabidopsis thaliana]	4.0e-28	65%
RefSeq	Populus trichocarpa	XP_002308979.1	methyl binding domain protein, partial [Populus trichocarpa]	7.0e-26	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRS8

Fln msg:

Fln protein: MSSPAEKEQQHAEKEPEMEAQPDSVEVVSVELPAPPGWKKQFIPKKGGTPKRNEIIFIAPTGEEIKNKRHLSQYLKAHPGGPDITEFEWGTGDTPRRSARLSEKPKTTETPESESKKTTPKRSRKSEGASENAKEKKKKGAEAPSQELEAGKEEEMQDVENVEDSAKGKTSASETAEDVGKDEKDDEKEKPAMKAEEQQEDNEEKPESEPDVMTDGPKSDEAVEVAADKGEETPLKDPKVQEVEGAGTEKTEVKQKEETQEEHHGGDGKPEEITTAVPVESLEAKEENKCAGSYVDNSKNGEPVEQMEVAREPNEKHASQENAQLREINSLRCEQLPEPSSVSC*

Protein Length: 346

Fln nts: TTAAAACGCAGTTTAATGTGTCTACAGCTTCACCTTTCATTTCGACTCGACAGTCAATCATTCCTCACGCGAAGTGTAGTGAAGAGAACACGCAATTGGTGGCCAGAATACGAAGAGAAGTTGGAGCTTCTGCGATTCGAACTCGCAAC_-_ATGTCTAGCCCAGCCGAGAAGGAGCAGCAGCATGCTGAGAAGGAACCCGAGATGGAAGCACAACCAGACTCCGTTGAAGTTGTTTCCGTCGAGCTTCCAGCTCCCCCAGGATGGAAGAAACAGTTTATTCCCAAGAAAGGGGGGACCCCAAAGAGGAATGAGATTATTTTCATTGCTCCTACAGGTGAGGAGATCAAGAATAAGCGGCATCTGTCGCAGTACTTGAAAGCCCATCCAGGAGGTCCTGATATTACGGAATTTGAGTGGGGCACAGGTGATACACCAAGGAGATCTGCAAGATTAAGTGAGAAGCCAAAAACAACCGAAACCCCAGAAAGTGAGTCTAAAAAGACAACTCCAAAGCGATCTAGGAAATCAGAGGGCGCTTCTGAAAATGCAAAAGAAAAGAAAAAGAAAGGAGCTGAAGCCCCTTCTCAAGAACTTGAAGCTGGAAAGGAAGAAGAAATGCAAGATGTTGAGAATGTGGAGGATTCAGCTAAAGGAAAAACTTCTGCTTCAGAAACGGCGGAAGATGTTGGAAAAGATGAGAAGGATGACGAGAAAGAGAAACCAGCAATGAAGGCTGAAGAGCAACAAGAAGACAATGAAGAAAAACCAGAATCAGAACCTGATGTGATGACTGATGGACCTAAATCTGATGAAGCAGTGGAGGTGGCTGCTGACAAAGGAGAAGAAACACCATTGAAGGATCCGAAAGTTCAGGAGGTGGAAGGGGCAGGAACTGAGAAGACAGAAGTGAAACAGAAAGAAGAAACGCAAGAAGAGCACCATGGTGGGGATGGCAAACCTGAGGAGATAACAACTGCGGTGCCAGTAGAATCACTGGAGGCAAAGGAGGAGAATAAATGTGCTGGATCTTATGTTGACAACTCTAAGAACGGGGAACCTGTAGAGCAAATGGAAGTAGCACGTGAACCTAATGAAAAGCATGCTAGTCAAGAGAATGCACAGCTACGAGAGATTAATTCTCTGCGATGCGAGCAGCTCCCTGAACCATCTTCAGTGAGCTGCTGA___ATCCCATCGTTTCTCCGCTGTGTATTGTTATAGTTTAGTACATGATTCATCGTTAGCCGTGCTTCAGGTTTGGGGTTTTGTGTAGGTAATAAATTCTTACAAAGGTCTTTTTAGCATTGCAATGCGGTAGCAATGCCACATCTCAAATCTAAACAACGGAACCTGGGGATGCAGTTTGTCTGTTGACATTGCAGACTCACCTAAATCAGAGCTTTTCGAAGCATGCACTTTGCATTTCTGATACAATTCGATTTCTAACTTTGTAAGTTTATTCTGCTAATGCTGTTATTCGACCATGTAATCGATGGGCTTTGGTGCCCTCCAAAGACTTATCTGCGCTGTAACTTGTTTAAATTGGGTAGTTTTGACAGCCTTTACTTTTATGGAACTTTTGAGTGTCTTCTGCAGAGCAGGTTTGAGGAAGTCAAATTCGTTTTTGCTCTGAAATTCTGAAGCCTTTCAGGACATGCAATATAGGCAAGTTGCTCAATGACTCACGGACCTGCTGATGTAGTGTTGTCTATTGCTATTCCGTTTTGTTCCAAGTCAACTCAGTCCATGTTACACTGGTAGAGGAATACCTCTATTAATGTTACTAAGACAACATTGCAAATTTTTAAACACACATGCAATATAGGCAAGTTGATCAATGACTTACGGACCTGCTGATGTAGTGTTGTCTATTACTTTTCCGTTTTGTTCCAAGTCAACTCAGTCCATGTTACACTGGTAGAGGAATATCGTTCTCCAAAATACTTGAAGTGATTCAAAAGACAGATTGCTGAGGAACTCCAGATTGTAGAGTATCAGTGAGACATACAGAGGGCGTGTCAATGTGTCTGTGTACATACGTAGGTAATGTGTTTGTGTGTGCGCTATCATGAATGAGAAAGCTTTTCAATGTAGATACGAGATGGAGATGATGGCAAAAGGATGCTGAGTTGAAGGTAGCAAGTTATGCCCTTCCAAACATCATATCTCAGTTGGAGCCATGGCAGTTTATAATGAGCGAGCAATGGTTATTTAAGGCAAAGCCACATGATTGGTTCTTGCCAAAGCAAAATTGGAGAATCAACATGGCAATGGCTTGGAAGTACTCGCCAGTAGTTCGGCCGATTAAAACTACAATAGCTCCTACTGTTAATCTGCAATAATAAAGCAATAATTCAACAAAACTTGGCAATAAAATAACCTGGAACTTGTTGAATTGCTCCACACTAGGTGTACTTCGCAGCCTTGCCAAGTCTCTCAAGATACACCGAATTTCTATGAGCATGGCTCACATGACTGGCATTGACCCAAGCCACTTAAGTCACCAAGTTCCAAGGAGCCATGTAACTGTGGCTTAGGGGCCAACACAGGTAGCCCTTATATGTACTATGAATGATTACTAGTGTTTTTTCACGATGTCGGAATTATTGGATTGTGCTGAGTGGTTTTATTGGATTGTACAGTTCTTTTGTCGACGCATTTTGTCTTTTAGAAAATATGAAGTTTCATTATTTTTAGAGATTGTAACTAAGAATTCTTGTAAATTATTGTTCTCTCGCAGTGGTTGCATTACTGGCATCAATCCAGTTGTATATAAATTTGACATGCGTCAGCAAAGTACGAGAAGTTTTTACCCCTTATTACATAGAAACCTAAAGCAAATAAGGATTCCC

Fln Alignment:

Contig29438___MSSPAEKEQ-QHAEKEPEMEAQPDSVEVVSVELPAPPGWKKQFIPKKGGTPKRNEIIFIAPTGEEIKNKRHLSQYLKAHPGGPDITEFEWGTGDTPRRSARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSQELEAGKEEEMQDVENVEDSAKGKTSASETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMTDGPKSDEAVEVAADKGEETPLKDPKVQEVEGAGXXXXXXXXXXXXXXXHHGGDGKPEEITTAVPVESLEAKEENKCAGSYVDNSKNGEPVEQMEVAREPNEKHASQENAQLREINSLRCEQLPEPSSVSC
C0PRS8_______________MASPTEKEQLQHTEKDPETETQPDSAEVVSVELPAPPGWKKQFLPKKGGTPKRNEIIFIAPTGEEIKNRRQLSQYLKAHPGGPDITEFEWGTGDTPRRSARLSEKPKTTETPESESKRTTPKRSRKSEGASENAKEKKKKGAESPSEEVEAGKEEEMQDVENVDDSAKGKTSASETTEDVGKDRQDDKEEKPEIKPEEKQEDNGEEPESEPDVKTDGPKSDEAVEAAVDKGEETPLKDPEVQEVEEAGTEQTEVKQKAEKQEEHHGGDDKPEEITIVVPGESLGGKEENKCAGANVDNSKNGEPVEQKEVAHEPNEKHASQENAQLREINSLRCEQLPEPSSVSC

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
542		3		96	0.991825
544	82		17		1.0
548		4		95	0.996599
549	2		83		1.0
550	36			2	1.0
2357	66		33		0.997452
2613		11		88	0.923564
2698	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain