SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28996

Length: 503 nt

UniGene Fasta

>sp_v3.0_unigene28996
ATTTAACGTTAGGCGTCAAGAGACATACAGACCCCGGAACTCTCACCATATTACTCCAAGACCAAGTTGGAGGCCTTCAGGCCACAAAAGACGACGGCAAAACATGGGTCACTGTGGAACCCATTGATGGAGCCTTCGTTGTAAATCTCGGAGACCAGATGAATGTATTGAGTAACGGTATTTTCAAGAGCGCAGATCATCAAGCTGTTGTAAATTCGAGTGCTTTAAGGCAATCCATAGCGACATTCTATAACCCCCATCCAGACTCCATTGTTTATCCGCTGGATGGATTGCACGCGACTGAGCAGGTAAGTCCCGCACGTGCAAAATTTGAACGCTACATTTACAGGGAATTCTACCAGAAGAAGATGATCAAACATCTCCTGGACAGAGAGATCAAACGCAAGAAGGGAATTATTTTACTACAGCCGCAAAAAGGTTAGTTGGGCAATCGAGTAGGTCCATCGAATTCTCTGCTGTGATGGGTTCACTTATGGAAGTTG

Ace file of the UniGene sp_v3.0_unigene28996

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flavanone 3-hydroxylase 2 (Fragment) n=3 Tax=Pseudotsuga menziesii var. menziesii RepID=Q5ME24_PSEMZ	-	-	1.0e-38	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Flavanone 3-hydroxylase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavanone 3-dioxygenase.	EC:1.14.11.9	-	4.43931e-42	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	4.43931e-42	%
Sma3	Biosynthesis of phenylpropanoids	01061	4.43931e-42	%
Sma3	Metabolic pathways	01100	4.43931e-42	%
Sma3	Biosynthesis of secondary metabolites	01110	4.43931e-42	%

Source	Gene names
Sma3	AN3; AT3G51240.1; AT4g10490; At2g38240; At2g38240/F16M14.17; At3g51240; At4g10490; At5g05600; CitF3H; CtF3H; EgF3H; F24M12.280; F3H; F3H-1; F3H-2; F3H-A; F3H-A1; F3H-B1; F3H-D1; F3H-FL1; F3H1; F3H2; F3H4; F3H6; F3H7.17; F7L13.70; FHT; FrF3H1; GSVIVT000144

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	L-ascorbic acid binding	GO:0031418	Molecular Function	-
Sma3	naringenin 3-dioxygenase activity	GO:0045486	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51240.1	F3H, TT6, F3'H flavanone 3-hydroxylase chr3:19025409-19026658 FORWARD LENGTH=358	1.4013e-45	58%
RefSeq	Arabidopsis thaliana	NP_001190050.1	Naringenin,2-oxoglutarate 3-dioxygenase [Arabidopsis thaliana]	0.0	58%
RefSeq	Populus trichocarpa	XP_002338387.1	flavanone 3-hydroxylase, partial [Populus trichocarpa]	0.0	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1U0

Fln msg: your sequence is shorter than subject: 147 - 359

Fln protein: LTLGVKRHTDPGTLTILLQDQVGGLQATKDDGKTWVTVEPIDGAFVVNLGDQMNVLSNGIFKSADHQAVVNSSALRQSIATFYNPHPDSIVYPLDGLHATEQVSPARAKFERYIYREFYQKKMIKHLLDREIKRKKGIILLQPQKG*

Protein Length: 148

Fln nts: ATTTAACGTTAGGCGTCAAGAGACATACAGACCCCGGAACTCTCACCATATTACTCCAAGACCAAGTTGGAGGCCTTCAGGCCACAAAAGACGACGGCAAAACATGGGTCACTGTGGAACCCATTGATGGAGCCTTCGTTGTAAATCTCGGAGACCAGATGAATGTATTGAGTAACGGTATTTTCAAGAGCGCAGATCATCAAGCTGTTGTAAATTCGAGTGCTTTAAGGCAATCCATAGCGACATTCTATAACCCCCATCCAGACTCCATTGTTTATCCGCTGGATGGATTGCACGCGACTGAGCAGGTAAGTCCCGCACGTGCAAAATTTGAACGCTACATTTACAGGGAATTCTACCAGAAGAAGATGATCAAACATCTCCTGGACAGAGAGATCAAACGCAAGAAGGGAATTATTTTACTACAGCCGCAAAAAGGTTAG___TTGGGCAATCGAGTAGGTCCATCGAATTCTCTGCTGTGATGGGTTCACTTATGGAAGTTG

Fln Alignment:

Contig28996___LTLGVKRHTDPGTLTILLQDQVGGLQATKDDGKTWVTVEPIDGAFVVNLGDQMNVLSNGIFKSADHQAVVNSSALRQSIATFYNPHPDSIVYPLDGLHATEQVSPARAKFERYI-YREFYQKKMIKHLLDREIKRKKGIILLQPQK
A9P1U0_______________MTLGLKRHTDPVTITLLLQDQVGGLQATKDDGKNWITVEPIEGAFVVNLGDHMHYLSNGKFKSADHQAVVNSNSSRLSIATFHNPAPEGIVYPLDGV--VKEAEGEKCFMEEPITYAQMYSRKMSR---DIELARQKKMAKVAEQE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
376	66			33	0.997452
377	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain