SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28980

Length: 1007 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene28980

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox-leucine zipper-like protein n=2 Tax=Picea RepID=Q3HRT1_PICGL	-	-	4.0e-25	54%
FL-Next	Isoform 2 of Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7	-	-	0.0	52%
Sma3	Homeobox protein, putative	-	-	1.181e-14	-

Source	Gene names
Sma3	ATHB-1; ATHB-13; ATHB-16; ATHB-20; ATHB-23; ATHB-54; ATHB-6; At1g26960; At1g27050; At1g69780; At2g22430; At3g01220; At3g01470; At4g40060; CPHB-4; CPHB-5; CPHB-6; F14M13.17; F4P13.2; GSVIVT00000088001; GSVIVT00007830001; GSVIVT00012167001; GSVIVT0001518100

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to blue light	GO:0009637	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	negative regulation of cell growth	GO:0030308	Biological Process	-
Sma3		GO:0045941	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-
Sma3	cotyledon morphogenesis	GO:0048826	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3		IPR012287	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G40060.1	ATHB16, ATHB-16, HB16 homeobox protein 16 chr4:18571682-18572774 REVERSE LENGTH=294	5.0e-26	54%
RefSeq	Arabidopsis thaliana	NP_195716.1	homeobox-leucine zipper protein ATHB-16 [Arabidopsis thaliana]	7.0e-26	54%
RefSeq	Populus trichocarpa	XP_002321530.1	predicted protein [Populus trichocarpa]	7.0e-27	49%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
618	66		33		0.997452
633	66		33		0.997452
634	66		33		0.997452
660		25		75	0.996473
780		20		80	0.995493
947	88		11		0.923564
975	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain