SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene28938

Length: 984 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene28938

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative cytochrome P450 [Oryza sativa Japonica Group] gb\|EAY89085.1\| hypothetical protein OsI_10573 [Oryza sativa Indica Group]	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Cytochrome P450	-	-	2.807e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	1.201e-37	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	1.201e-37	%
Sma3	Steroid hormone biosynthesis	00140	1.201e-37	%
Sma3	Caffeine metabolism	00232	1.201e-37	%
Sma3	Tryptophan metabolism	00380	1.201e-37	%
Sma3	Arachidonic acid metabolism	00590	1.201e-37	%
Sma3	Linoleic acid metabolism	00591	1.201e-37	%
Sma3	Aminobenzoate degradation	00627	1.201e-37	%
Sma3	Retinol metabolism	00830	1.201e-37	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	1.201e-37	%
Sma3	Drug metabolism - cytochrome P450	00982	1.201e-37	%
Sma3	Drug metabolism - other enzymes	00983	1.201e-37	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.201e-37	%
Sma3	Metabolic pathways	01100	1.201e-37	%

Source	Gene names
Sma3	AT4g39480; AT4g39490; A_IG005I10.21; At1g01600; At1g01600/F22L4_10; At1g13150; At1g24540; At1g34540; At1g63710; At2g21910; At2g23180; At2g23180/T20D16.19; At2g27690; At2g27690/F15K20.21; At2g44890; At2g45510; At2g45970; At3g01900; At3g26125; At3g48520; At

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3		GO:0008393	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	suberin biosynthetic process	GO:0010345	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G34540.1	CYP94D1 cytochrome P450, family 94, subfamily D, polypeptide 1 chr1:12637054-12638550 FORWARD LENGTH=498	55%
RefSeq	Arabidopsis thaliana	NP_174713.1	cytochrome P450, family 94, subfamily D, polypeptide 1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002333384.1	cytochrome P450 [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LML7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 258 - 456

Fln protein: LFDQERNQMVVLRLKKNIMTFFPDSWRLSMTGD*IMRSIS*RKW*LALCWRGRDTTAAALTWFFWLLSSHPLVEEAIRHEILSVLAKRGVNKGEEEELNGVALFNYEEVKGMPYLHAALCESMRLYPPIPVDTKIASSDDMLPDGTCMRKGWFLCYNIYSMGRMESIWGKDFMEFKPERWLDVNGNFEVENSFKFPVFNAGPRICMGKEMAFIQMKSIVASLLHRFTLKIDKEYCAQYTLSITLRMKGGLPVIVNSL*

Protein Length: 259

Fln nts: GTTATTCGATCAAGAAAGGAATCAGATGGTGGTATTGAGATTGAAGAAGAACATCATGACCTTCTTTCCAGATTCATGGCGGCTGTCGATGACAGGGGATTGAATCATGAGGTCAATCTCCTGAAGGAAATGGTGATTAGCATTATGCTGGCGGGGCAGAGATACTACTGCCGCCGCTCTGACATGGTTTTTCTGGCTTCTTTCTTCTCATCCCCTTGTAGAAGAAGCCATTCGCCATGAAATTCTCAGCGTCTTAGCCAAACGTGGTGTCAATAAAGGGGAAGAAGAGGAATTAAACGGAGTAGCTCTGTTTAATTACGAGGAAGTCAAGGGCATGCCATATCTCCATGCCGCCCTGTGCGAATCAATGAGATTGTACCCTCCCATCCCTGTCGACACCAAAATTGCTTCTAGCGATGATATGTTACCGGACGGAACATGCATGAGAAAAGGGTGGTTTCTGTGTTACAATATTTATTCAATGGGAAGGATGGAGAGTATCTGGGGCAAAGATTTCATGGAGTTCAAGCCAGAGAGATGGCTGGACGTTAACGGGAACTTTGAAGTGGAGAACTCATTCAAGTTTCCAGTATTCAACGCGGGACCTCGTATTTGCATGGGGAAAGAGATGGCCTTCATACAGATGAAGTCCATCGTTGCCTCTCTTCTTCATCGCTTTACTCTAAAGATAGATAAGGAATACTGTGCACAGTATACTCTTTCAATAACTCTACGCATGAAGGGTGGGTTGCCAGTTATTGTTAACAGTTTATAG___ATACCAATATTTATAGGGCAGAGATGATTACAGTTATAATAGCTAGCTAGTTACACCAGGGTATTGGTGTCGTCTTGTCCTGGGGAAACTTAATGTTATTGTAGACTTTGGAAATATTTAGGAATGCCAATGGTTCAACCTGACTCCTCTCTATGAAATTACTAAAACATTTCCTAATTAAGGAGTTCAGATGCTCAACAGTCCTTAAG

Fln Alignment:

Contig28938___GRDTTAAALTWFFWLLSSHPLVEEAIRHEILSVLAKRGVNKGEEEELNGVALFNYEEVKGMPYLHAALCESMRLYPPIPVDTKIASSDDMLPDGTCMRKGWFLCYNIYSMGRMESIWGKDFMEFKPERWLDVNGNFEVENSFKFPVFNAGPRICMGKEMAFIQMKSIVASLLHRFTLKIDKEYCAQYTLSITLRMKGGLPVIVNS
B8LML7_______________GRDTTSTALTWFFWLISSRPHIQEAIRREILLVKGNRNSITVEPEDQ--WVVFDFDELKGMQYLHAALCESMRLWPPVPVDTKVAATDDVLPDGTVVPRGWFVSYSIYSMGRMESIWGGDFMDFRPERWLK-DGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVIHRFSLEVDSEYVPKYAMSITLRMKTGLPVNVKS

SNPs (tot: 3)

Position	A %	C %	G %	Probability
788	66		33	0.997452
807	66	33		0.997452
917		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain